KEGG   Micromonospora sp. SH-82: WHN02_07060
Entry
WHN02_07060       CDS       T11153                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
micn  Micromonospora sp. SH-82
Pathway
micn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:micn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    WHN02_07060 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:micn03400]
    WHN02_07060 (ligD)
Enzymes [BR:micn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     WHN02_07060 (ligD)
DNA repair and recombination proteins [BR:micn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     WHN02_07060 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: XXG09057
LinkDB
Position
1518389..1519297
AA seq 302 aa
MAGDRLRVDVQGRAVELSNLDKVLYPAAGFTKGEVIDYYTRIAPVLLPHLADRALTRIRY
PDGVDGGSFFEKNRPAATPDWVRVATLPVPGSGKGRETIDYVVADDLPTLVWLANLAALE
LHTPQWRIGTHPDLMVVDLDPGAPAALRQCCQVALLLRDRLAVDGVEAHPKTSGKKGMQL
SCPVAGTQSAEVVSGYAKRIAQELEQRHPRLVVSKMAKNLRPGKVFIDWSQNSAAKTTVA
PYSLRAAPTPTVSAPLTWEEVEAGAAGERPATTPYGPTEVLDRVETYGDLMSDGGVRPAL
PE
NT seq 909 nt   +upstreamnt  +downstreamnt
gtggcgggtgaccggctccgggtcgacgtgcagggacgcgcggtggagctgtccaacctc
gacaaggtcctctatccggcggccgggttcaccaagggtgaggtcatcgactactacacc
cggatcgccccggtcctcctgccgcacctggccgaccgggcactcacccggatccggtac
cccgacggcgtcgacggtggttcgttcttcgagaagaacagacccgccgccacccccgac
tgggtacgcgtggccaccctccccgtccccggctccggcaaggggcgggagaccatcgac
tacgtggtcgccgacgacctgcccaccctggtgtggttggcgaacctggccgccctggag
ctgcacaccccgcagtggcggatcggcacccatcccgacctgatggtggtggacctggac
ccgggtgccccggcggccctgcgccagtgctgccaggtggcgttgttgctgcgtgaccgg
ctcgccgtcgacggcgtcgaggcacacccgaagacctccgggaagaagggcatgcagctc
tcctgcccggtggcggggacccagtccgccgaggtggtctccgggtacgccaagcggatc
gcccaggagttggagcagcggcatccgaggctggtcgtgtcgaagatggcgaagaacctc
cgccccggaaaggtcttcatcgactggagtcagaacagcgcggcgaagaccaccgtcgcg
ccgtactccctgcgggccgccccgactccgaccgtctccgccccgctgacctgggaggag
gtcgaggccggcgcagccggcgagcgtccggccaccacaccgtacggcccgaccgaggtc
ctcgaccgggtcgagacgtacggcgacctgatgtcggacggtggtgttcgacctgccctt
cccgagtag

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