Micromonospora sp. SH-82: WHN02_20450
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Entry
WHN02_20450 CDS
T11153
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
micn Micromonospora sp. SH-82
Brite
KEGG Orthology (KO) [BR:
micn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
micn03016
]
WHN02_20450
Enzymes [BR:
micn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
WHN02_20450
Transfer RNA biogenesis [BR:
micn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
WHN02_20450
Prokaryotic type
tRNA splicing ligases
WHN02_20450
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XXG06546
LinkDB
All DBs
Position
complement(4613854..4615053)
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AA seq
399 aa
AA seq
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MSFTELPGTRAPVRVWTDPYGIEPQAARQLRNIGALPWVQGVAVMPDVHFGKGATVGSVI
AMRQAVSPAAVGVDIGCGMSAVRTSLTAVDLPDDLGPLRRAIESAIPVGFSMHADAVDPR
RVRGLEQGGWGDFWQRFGTLDRRVAQLETRARRQLGTLGGGNHFIEVCLESGGADDGRVW
LMLHSGSRNIGKELAERHMAVARGLPHNADLPDRDLAVFLTGTPEMDAYRRDLWWAQEYA
RRNRAVMLALLGNVVREHFPQVGFDEPISAHHNYVAEETFGGEEVLVTRKGAIRAGRGDL
GVIPGSMGTGSYIVRGKGNPDAYCSASHGAGRRMSRGQAKRTFSTADLVAQTAGVECRKD
AGVVDEIPGAYKDITEVMAQQDDLVEVVAHLRQVVCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcaccgagctgccggggacccgggctcccgtacgggtctggaccgacccgtac
ggcatcgagccgcaggccgcccggcagctgcgcaacatcggcgcgctgccctgggtgcag
ggggtcgcggtgatgccggacgtgcacttcggcaagggggccaccgtcgggtcggtgatc
gcgatgcggcaggcggtgtccccggcggccgtcggcgtggacatcggctgcggcatgtcc
gccgtccggacctcgctgaccgcggtcgacctgcccgacgacctcggcccgctgcggcgt
gccatcgagtcggcgatcccggtcgggttctccatgcacgccgacgccgtcgacccgcgc
cgggtccggggcctggagcagggcggttggggtgacttctggcagcggttcggcaccctc
gaccgccgggtggcgcagctggagacccgggcccgtcgccagctgggcacgctgggtggg
gggaaccacttcatcgaggtctgcctggagtcggggggcgccgacgacggtcgggtctgg
ctgatgctgcactccgggtcgcgcaacatcggcaaggagctggccgagcggcacatggcg
gtggcccgggggctgccgcacaacgccgacctgcccgaccgggacctggcggtcttcctc
accggcaccccggagatggacgcctaccggcgggacctgtggtgggcgcaggagtacgcc
cggcgcaaccgggcggtgatgctggcgctgctgggcaacgtggtgcgggaacacttcccg
caggtcgggttcgacgagccgatctccgcgcaccacaactacgtcgccgaggagaccttc
ggtggcgaggaggtgctggtgacccgcaagggcgcgatccgggccggacggggggacctg
ggcgtcatccccggttcgatgggcaccgggtcgtacatcgtgcgggggaagggcaacccg
gacgcgtactgttcggcgtcgcacggcgccgggcgtcggatgtcgcgggggcaggccaag
cggacgttcagcaccgccgacctggtggcgcagaccgccggggtggagtgccgcaaggac
gccggggtggtcgacgagatccccggggcgtacaaggacatcaccgaggtgatggcgcag
caggacgacctggtggaggtcgtggcgcacctcaggcaggtggtgtgcgtcaagggttga
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