Microvirga thermotolerans: GDR74_06725
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Entry
GDR74_06725 CDS
T06255
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mico
Microvirga thermotolerans
Pathway
mico03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mico00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GDR74_06725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mico03019
]
GDR74_06725
Enzymes [BR:
mico01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GDR74_06725
Messenger RNA biogenesis [BR:
mico03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GDR74_06725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
P-loop_SecA
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
QFU15939
UniProt:
A0A5P9JUT3
LinkDB
All DBs
Position
1432236..1433693
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AA seq
485 aa
AA seq
DB search
MTLFTDFGLAQPILKALAAEGYEKPTPIQAQTIPYALEGRDVCGIAQTGTGKTAAFALPI
LHRLDAAPRARIRRSCRVLVLSPTRELSGQIADSFRAYGRNLKLSTSVVFGGVTIGKQER
ELAPGVDILVATPGRLLDLVDRKALSLRDVEILVLDEADQMLDLGFIHALKRIVTLLPKE
RQSLFFSATMPKTIATLADAFLRDPAKVAVTPVATTAERVEQKVMFVATGRKQALLEIVL
RDEAIDRVLVFTRTKHGADKVVRSLDKAGIAAAAIHGNKSQPQRERALAAFRNGSCRVLV
ATDIAARGIDVEGVSHVINYDLPNVPESYVHRIGRTARAGADGLAISFCNDEERAYLKDI
EKLTRMQVPVAPLPEGFSAGPVGQEPQEPARQPQQQRGRPAPHARGHQGHGQPREADPNA
ERGPKRRRRRGGQKAAVAASPSNGGQRQASNPPAQAPRQRPQAQPGRAQGRRDGAQVAWL
EKAPR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgactcttttcaccgatttcggattggcccagccgatcctgaaggccctcgccgccgag
ggctacgagaagcccacgcccatccaggcccagaccattccctacgcgctcgagggccgc
gacgtatgcggcatcgcccagacgggaaccggcaagacggcggccttcgccttgcccatc
cttcatcgcctcgacgccgcgccccgggcccgcatccgcaggagctgccgggtgctggtg
ctgagcccgacccgcgaactgtccggccagatcgccgacagcttccgcgcctatggccgc
aacctgaagctctcgacctccgtcgtgttcggcggcgtgaccatcggcaagcaggagcgc
gagctcgcacccggcgtcgacattctcgtggccacgccgggccgcctgctcgatctcgtg
gaccggaaggccttgagcctgcgcgatgtggaaattctcgtcctcgacgaggccgaccag
atgctggatctcggcttcattcatgcgctcaagcgcatcgtcaccctgctgccgaaggag
cggcagagcctgttcttctcggccaccatgccgaagaccatcgcgaccctggcggacgcc
ttcctgcgcgatcccgccaaggtggccgtcacgcccgtggcgacgaccgcggagcgggtg
gagcagaaggtcatgttcgtggcgaccggccgcaagcaggccctgctcgagatagtgctg
cgggacgaggccatcgatcgcgtcctcgtcttcacgcgcacgaagcacggcgcggacaag
gtcgtccggtccctcgacaaggcaggcatcgccgcggcggcgatccacggcaacaaatct
cagcctcagcgggagcgcgcgctggccgcgttccgcaacggttcatgccgggtccttgtc
gcgaccgacatcgcggcccgcggcatcgacgtggagggcgtgagccacgtgatcaactac
gacctgccgaacgtgccggagtcttacgtccatcgcatcggccgcacggcccgcgccggc
gccgacgggctcgccatctcgttctgcaacgacgaggagcgcgcctatctcaaggacatc
gagaagctgacccgcatgcaggtgccagtggcgccgctgccggaagggttctccgccggt
cccgtcggccaggagccgcaggagccggctcggcagccgcagcagcagcgtggccgcccc
gcgcctcatgcccggggccaccagggccacggccagccgcgggaggccgatccgaacgcg
gagcgcggccccaagcgccgccgccgtcgcggaggccagaaggctgcggttgcggcaagc
ccctcgaacggggggcagcggcaggcatcgaacccgccggcgcaggctcctcgccagcgt
ccgcaggcgcagccaggacgcgcccagggccgccgcgacggcgcgcaggtcgcctggctc
gaaaaggcgccccgctga
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