Microvirga thermotolerans: GDR74_09015
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Entry
GDR74_09015 CDS
T06255
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mico
Microvirga thermotolerans
Pathway
mico03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mico00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GDR74_09015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mico03019
]
GDR74_09015
03009 Ribosome biogenesis [BR:
mico03009
]
GDR74_09015
Enzymes [BR:
mico01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GDR74_09015
Messenger RNA biogenesis [BR:
mico03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GDR74_09015
Ribosome biogenesis [BR:
mico03009
]
Prokaryotic type
rRNA processing factors
GDR74_09015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
QFU16354
UniProt:
A0A5P9K2B9
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All DBs
Position
complement(1939500..1942151)
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AA seq
883 aa
AA seq
DB search
MANKMLIDASHPEETRVVVVRGQKVEEFDFESANRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRMALLEAEAEAQREEELEEERRSRRRRSSAKRARS
DETVTTPDADAGEAASAEAAEGAAHGEEGLALASAEAAEGTAAEAGPETLAESADGNGGE
TGETARARSHEAGEASTEAADEEDEEHDEEDEHEDAVEQLGGGDALEDVPQRPRVPRKQY
KIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITNAAD
RKRLKEIAQDLAVPEGMGIILRTAGASRTKPEIKRDYEYLMRLWESVRELTLNSTAPALV
YEEGSLIKRAIRDLYNKDIDEILVSGDEGYREAKDFMRMLMPSHAKIVKPYREPQPLFAK
YGVEAQLDAMFSNHVTLKSGGYLVINPTEALVSIDVNSGRSTREHNIEDTALRTNLEAAE
EIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLNECLKNDRARIQVGRISPFGLLEMS
RQRIRTGVLESSSVPCPHCAGTGFVRSTPSVALHVLRSIEETLIKNAGYNLVVRTRTEAA
FYILNQKRVHLRELEDRFGVAIAVVADDSLMGTTTYAIDRGEPALRLEQKSVATGIQIDA
IMPPEEVSEEETEAAEGEEQAEEARAGEERAEEGEGGRRRRRRRRRRGRDRDGARPEQHA
EEAEGLEGEAAPTGEGEEVGESLSEAEDEAHAAAAGEGDERPGRRRRRGRRGGRGRGRDE
AAVEFAMEEGFVAQQEGEGEAAAAEPAPAEAAAPAPAPEAEPLAAESGPIAAPAPAVEEE
PAPAPQPVVPEPEPVAVVLTPPDPDRPKRAGWWSRAKSVLSGH
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagatgctcatcgatgcctcccacccggaagaaacccgggtcgtggtggta
cgtggtcagaaggtcgaagaattcgacttcgaatccgctaaccggaaacagctgcgaggc
aatatctacctcgcgaaggtcacaagggtcgaaccctccctccaggcagccttcgtcgaa
tacggcgggaaccgccacggtttcctggccttcagcgaaatccatcccgactactaccag
atccccgtcgccgaccgcatggcgctcctcgaggccgaggccgaagcccagcgggaggag
gagctcgaggaggagcgccgcagccggcgccgccgttcctcggccaagcgcgcccgctcc
gacgagacggtgacgaccccggatgcggatgccggcgaagccgcctccgccgaggcggcc
gaaggcgcggcccacggcgaggaggggctggccctggcctccgccgaggctgcggaaggg
acggcggccgaggccggacctgagacactcgcggaaagcgccgacgggaacggcggcgaa
accggcgagacggcccgcgcccgctcccacgaggccggcgaggcttccacggaggccgcg
gacgaggaggacgaggagcacgacgaagaggacgagcacgaggacgcggtcgagcagctc
ggcggcggcgacgccctcgaggacgttccccagcgcccccgcgtcccgcgcaagcagtac
aagatccaggaagtcatcaagcgccgccagatcctcctggtccaggtcgtgaaggaggag
cgcggcaacaagggcgccgccctcacaacctatctctccctcgccggccgctattccgtg
ctgatgccgaacaccgggcgcggcggcggcatctcccgcaagatcaccaacgcggccgac
cgcaagcgcctgaaggagatcgcccaggatctcgcggtgccggagggcatgggcatcatc
ctgcgcacggccggcgcctcgcgcaccaagccggagatcaagcgcgactacgaatacctc
atgcgcctgtgggagagcgtgcgcgagctgacgctgaactccacggcgcccgccctcgtc
tacgaggagggctcgctcatcaagcgcgccatccgcgacctctacaacaaggacatcgac
gaaatcctggtctcgggagacgaaggctaccgggaggccaaggatttcatgcgcatgctc
atgccgagccatgccaagatcgtgaagccctaccgcgagccgcagccgctcttcgccaag
tacggcgtcgaggcgcagctcgatgcgatgttctcgaaccacgtcacgctgaagtcgggc
ggctatctcgtcatcaacccgacggaggcgctcgtctccatcgacgtgaactccggccgg
tccacccgcgagcacaacatcgaggacacggcgctgcgcaccaatctcgaggccgccgag
gagatcgcccggcagctgcgcctgcgcgacctcgccggcctgatcgtgatcgacttcatc
gacatggaggagaagcggaacaaccgcgccgtcgagaagaagctgaacgagtgcctgaag
aacgaccgcgcccgcatccaggtgggccggatctcgcccttcgggctcctcgagatgtcg
cgccagcgcatccgcacgggggttctggaatcctcctccgtcccctgcccgcactgcgcc
ggaacgggcttcgtccgctcgacgccgtccgtcgccctgcacgtgcttcgctccatcgag
gagacgctgatcaagaacgcgggctacaacctcgtcgtccgcacccggacggaagcggcg
ttctacatcctcaaccagaagcgcgttcacctgcgcgagctcgaggaccgcttcggggtg
gcgatcgccgtcgtggccgacgacagcctgatgggcaccaccacctacgccatcgaccgg
ggcgagcccgccctgcgcctcgagcagaagtccgtggcgacggggatccagatcgacgcg
atcatgccgccggaggaggtctccgaggaggagaccgaggccgcggagggcgaggagcag
gccgaggaggcccgggccggcgaggagcgggccgaggaaggcgaaggcggccgccgccgc
cgtcgccgtcgtcgccgccgcggccgggatcgtgacggcgcccgtcccgagcagcacgcc
gaggaggccgagggcctcgaaggcgaagccgcccccaccggggaaggcgaagaggtcgga
gagagcctctccgaagccgaggacgaggcgcacgcggccgccgcgggcgagggagacgag
cgccccggccgccgccgccgccgcgggcgccgtggcggacgcgggcgcggccgcgacgag
gcggctgtcgagttcgccatggaggaaggcttcgtggcgcaacaggagggcgaaggcgag
gccgcggccgcagagcccgctccggccgaggccgccgcaccggccccggctccggaggcc
gagcctctcgccgcggaatccggccccatcgcggctcccgctcctgccgtggaagaggaa
ccggctcccgcgccgcagccggtcgtccccgagcccgaaccggtggccgtcgtcctgacg
cccccggacccggaccgcccgaagcgggccggctggtggtcccgcgcgaagtcggtgctc
agcggccactga
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