Microbacterium sp. 1.5R: BMW26_11835
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Entry
BMW26_11835 CDS
T04912
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
micr
Microbacterium sp. 1.5R
Brite
KEGG Orthology (KO) [BR:
micr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micr03019
]
BMW26_11835
Enzymes [BR:
micr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BMW26_11835
Messenger RNA biogenesis [BR:
micr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BMW26_11835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
nSTAND_NTPase5
nSTAND3
ResIII
T2SSE
NACHT
WHD_HA2
AAA_30
SLFN-g3_helicase
UvrD-helicase
PhoH
Motif
Other DBs
NCBI-ProteinID:
APH45562
LinkDB
All DBs
Position
2479433..2483311
Genome browser
AA seq
1292 aa
AA seq
DB search
MPSPVIFYPPELPVSAAREEIADAIRDNQVVIVAGATGSGKTTQLPKICLDLGRERIAHT
QPRRLAARTIAERVAEELQVELGGLVGYKVRFTDKVSDDTRIALMTDGILLNEIHRDRLL
RRYDTIIIDEAHERSLNVDFLLGYLVRILPERPDLKVIITSATIDPESFARHFATPEGVP
APVIEVSGRTFPVEIRYREQTEETEESDEVTAIVASLRELDREEPGDVLVFLPGEAEIRD
AADAVRGAYAKDRSPTEVLPLYGRLSAAEQHRVFEKSRVAGVRRRVVLATNVAETSLTVP
GIRYVIDTGTARISRYSNRSKVQRLPIEAISQASANQRSGRAGRTSDGIAIRLYSEEDFD
KRAEFTEPEILRTSLASVILQMLSLGFGDITAFPFLTPPDSRGVKAAVDLLTELGAVTGS
GDAPRLTRIGRDISRIPIDPRFARMLIEAGRPGGADVTRDVLAIVAGMSIQDVRERPSQE
APQSVRDEADRMHARFTDPTSDFLSILNLWNHLREQQRELGSSAFRRLCRSEHLNYVRVR
EWFDVHRQLRSLVREKDSSRGGTADPDAIHRALLAGLLSQIGILDERNTGKGLDPKKKRM
AEYRGARGIRFSIFPGSALRKKAPQAVMAAEIVETSRTYARTVAAIDPAWAEALAGDLAK
RQVTEPHWSKDAGAAVAYEKVTLFGVEIIPRRRVQFARIDRAASREMFVRHALVEGEWDP
TRIDKRVSAFWRSNAELRKRLEKLEERERRRDILAGDEAVFRFYDERIPTDVFDVRSFEK
WWRDALAATPKLLVMREADLLDDESRADQSEFPTRWTQGDQVLGLAYRFEPGAADDGVSV
VIPLPLLAQIEDRGFDWQVPGLRAELVTGLLRALPKAIRRHVVPAADWADKFGAELAGDG
PESHGGLPHRTLKEALARLIQPLANQLVSAADFEDDRVPAHLRMNFRAVDERGRVAGSNR
DLGALQAELADRARSSVARSIATPPRRPGPSKGPQPAAAATSIEKDGLTAWTFGELPEVL
DTRVAGGVVRGYPAIVDQGKTVSVRVESTADAAATATRAGVLRLVLLGVPSPSSYVQQHL
TSQEKLALAASPYQSAAALIEDCRAAVVQSTIDRLAPGGLVRTEAEFVRVRDAVSASLVD
DLFACVSLVARILTKTRDVERGIRSQNSLALLGPLNDIRTQLAGLLHPGFVSAAGVERLT
HFPRYLDGMLERLKTLANEPGKDRTRMSEFERMAKAFEDAGGAIPLPADAPPALVETRWL
LEEYRVSVFAQRLGTAQPVSPQRIMKVLSSRG
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgccttcccccgtgatcttctatcctcccgagctgccggtcagcgctgcgcgggaggag
atcgccgacgccatccgcgacaaccaggtcgtcatcgtggccggagcgacgggctcgggg
aagacgacgcagctgccgaagatctgcctcgatctcgggcgcgagcgcatcgcgcacacg
cagccccgacgactcgccgcccgcacgatcgccgagcgcgtcgccgaggagctgcaggtc
gagctcggcggcctcgtcggatacaaggtgcgcttcaccgacaaggtgtccgacgacacg
cgcatcgcgctgatgaccgacggcatcctgctcaatgagatccaccgcgaccggctgctg
cgccgctacgacacgatcatcatcgacgaggcgcacgagcgctcgctcaacgtcgacttc
ctgctgggatacctcgtgcggatccttcccgaacgacctgacctcaaggtgatcatcacg
tcggcgacgatcgatcccgagagcttcgccagacacttcgcgacgcccgagggtgtgccc
gcgccggtgatcgaggtgtccggccgcaccttccccgtcgagatccgctaccgcgagcag
acggaggagaccgaggagtccgacgaggtgaccgccatcgtcgcgtccctccgcgaactc
gaccgcgaggagccgggcgacgtgctggtgttcctgccgggcgaagccgagatcagggat
gccgccgatgccgtgcgcggcgcgtacgcgaaggaccgctcccccaccgaggtgctgccc
ctgtacggccggctgtcggcggcggagcagcaccgggtgttcgagaagagccgcgtcgcc
ggtgtgcggcgccgggtcgtgctcgccacgaacgtcgccgagaccagcctcaccgttccc
ggcatccgctacgtgatcgacaccggcaccgcgcgcatctcgcgatacagcaaccgctcg
aaggtgcagcggctgccgatcgaggcgatctcgcaggcctccgcgaaccagcgttcgggc
cgcgccgggcgcacgagcgacggcatcgcgatccgcctgtacagcgaggaggacttcgac
aagcgcgcggagttcaccgaacccgagatcctgcgcacctcgctcgcctcggtgatcctg
cagatgctgtcgctcggcttcggcgacatcaccgccttcccgttcctcaccccgcccgac
tcccggggagtcaaggccgccgtcgacctgctcaccgagctgggcgccgtcaccggcagc
ggagacgctcctcgactcacccgcatcggtcgcgacatctcccgaatcccgatcgacccc
cgcttcgcccgcatgctgatcgaggccggacgccccggcggcgccgacgtcacccgtgac
gtgctcgcgatcgtcgccggaatgtcgatccaggacgtgcgcgagcggccgtcgcaggag
gcgccgcagagcgtgcgcgacgaagccgaccgcatgcatgcgcgcttcaccgacccgacg
agcgacttcctgtcgatcctgaacctgtggaaccacctccgggagcagcagcgcgagctc
ggttcgagcgccttccgtcgcctgtgccgttcggagcatctcaactacgtccgggtgcgt
gaatggttcgacgtgcaccgtcagctgcggtcgctcgtgcgggagaaggactcctcgcgc
ggggggaccgcggatccggatgcgatccatcgggctctgctcgccggactcctgtcccag
atcggcatcctcgacgagcgcaacaccggcaagggcctcgatccgaagaagaagaggatg
gcggaataccgtggcgcccgcggcatccgcttctcgatcttccccggatccgccctgcgc
aagaaggccccgcaggcggtcatggccgccgagatcgtcgagacctcacgcacctacgcc
cgcacggtcgccgcgatcgaccccgcctgggcggaggcgctcgcgggcgatctcgcgaag
cgccaggtcaccgagccgcactggtcgaaggatgccggcgcggcggtcgcgtacgagaag
gtgacgctgttcggggtcgagatcatcccccgtcgccgtgtgcagttcgcgcgcatcgac
cgggcggcgtcgcgtgagatgttcgtgcggcacgccctcgtcgagggcgaatgggatccg
acgcgcatcgacaagcgggtcagcgctttctggcgcagcaacgccgaactgcgcaagcgc
ctcgagaagctcgaggaacgtgagaggcgtcgcgacatcctcgccggcgacgaagcggtg
ttccgcttctacgacgagcggatcccgaccgacgtcttcgacgtgcgctcgttcgagaaa
tggtggcgcgacgcgctggccgcgaccccgaagctgctcgtgatgcgcgaggccgacctg
ctcgacgacgagagcagggccgatcagagcgagttccccacccggtggacgcagggcgac
caggtgctcgggctcgcgtaccgtttcgagccgggggcggccgacgacggcgtgagcgtc
gtgatcccgttgcctctgctcgcgcagatcgaggacaggggcttcgactggcaagtgccg
gggctgcgcgccgaactcgtcaccggcctgctccgcgcactgcccaaggcgatccgacgg
cacgtggtgcctgcggccgattgggccgacaagttcggtgccgagctcgccggagacggc
ccggagtcgcacggcggccttcctcatcgcacgctcaaagaggcgctggcacgcctcatc
cagccgctcgcgaatcagctcgtctcggctgccgacttcgaagacgatcgcgtgcccgcg
cacctgcggatgaacttccgcgccgtcgacgagcgcgggcgcgtcgcgggatcgaaccgc
gacctcggtgcgctgcaggccgagctcgccgaccgtgcgcgcagcagcgtggcccggtcg
atcgcgaccccgccccgccgccccggcccctcgaagggaccgcagcccgctgccgccgcc
acctcgatcgagaaggacggcctcaccgcctggacgttcggcgaactgcccgaggtgctc
gacacccgcgtggccggcggagtggtgcgcgggtacccggcgatcgtcgaccaggggaag
accgtctcggtgcgcgtcgagtccacggcggatgccgccgccaccgccacgcgggcgggc
gtgctgcgcctcgtgctgctcggtgtgccctcgccctcgtcgtacgtgcagcagcacctc
accagccaggagaagctcgcactcgccgcgtcgccctaccagtcggccgccgcgctcatc
gaggactgccgggccgcggtcgtccagagcacgatcgatcggctggcgccgggcggcctc
gtgcgcaccgaggccgagttcgtccgcgtgcgcgacgcggtgtcggcgtcgctcgtcgac
gacctcttcgcctgcgtgtcgctcgtcgctcgcatcctcacgaagacccgcgatgtcgag
cgcggcatccgttcgcagaactccctcgcactgctcgggccgctgaacgacatccgcacg
cagctcgcgggactcctgcaccccgggttcgtctcggcggcaggcgtcgagcgcctcacg
cacttcccgcgatacctcgacgggatgctcgagcggctgaagacgctcgcgaacgagccc
ggcaaggaccgcacccgcatgagcgagttcgagcgcatggcgaaggccttcgaggatgcc
gggggcgcgatcccgctgcccgccgacgcgccgccggccctggtcgagacccgctggctg
ctcgaggagtaccgggtgagcgtgttcgcgcagcgtctcggcaccgcgcagcccgtctct
ccgcagcggatcatgaaggtgctgtcgtctcgggggtag
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