Microbacterium sp. SGAir0570: C1N74_05125
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Entry
C1N74_05125 CDS
T07987
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mics
Microbacterium sp. SGAir0570
Pathway
mics03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mics00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1N74_05125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mics03019
]
C1N74_05125
Messenger RNA biogenesis [BR:
mics03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1N74_05125
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
QCR39864
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Position
1096474..1098150
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AA seq
558 aa
AA seq
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MPTNVFSPPALEPGTLRVYPLGGLGEVGRNMTVFEYEGKLLVVDCGVLFPEEHQPGVDLI
LPDFEPIRHRLDDIVGVVLTHGHEDHIGAVPYLLKLKGDIPLIGSGLTLALIEAKLKEHR
IRPFTLTVAEGQEEQVGPFDLEFIAVNHSIPDALAVAVRTPAGLVLATGDFKMDQLPLDG
RITDLRAFARLGEEGVDLFLVDSTNADVPGFTPTERGIGPVLDQVISKSPRRVIVASFSS
HVHRVQQVVDAAAANGRRVAFLGRSMVRNMTIAENLGYLNVPDGVLIDYKKAKDLPDDRI
VYMSTGSQGEPMAVLSRMANLEHAIEPGPGDTVILASSQIPGNENAIYRVIDGLTKLGAN
VVHKGNAKVHVSGHAAAGELLYCYNILKPRNVLPVHGEYRHLMANAKLAQDTGVPQERTI
LAENGTVVDLKDGVAEVVGQLDIGFVYVDGSTVGEITDADLKDRRILGEEGFISVIVVVD
GKTGRVVSGPDIHARGVAEDDAVFESVKPKIAAALAEAVQSGTRDNHALSQVVRRTIGRW
VNQSLRRRPMIVPVVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgaacgtcttcagcccgcccgctctcgaacccggaacgctgcgggtctacccg
ctcggcggtctcggcgaggtcggccgcaacatgaccgtcttcgagtacgagggcaagctc
ctcgtggtcgactgcggcgtgctcttccccgaggagcaccagcccggcgtcgacctgatc
ctgcccgatttcgagccgatcaggcatcgcctcgacgacatcgtcggcgtcgtgctgacc
cacggccacgaggaccacatcggcgccgttccctacctgctcaagctcaagggcgacatc
cccctcatcggctcgggtctgacgctcgccctcatcgaggcgaagctcaaggagcaccgc
atccgccccttcaccctcacggtcgccgaggggcaggaggagcaggtcggcccgttcgac
ctcgagttcatcgcggtcaaccattcgatccccgatgcgctcgccgtcgcagtccgcacc
cccgcgggactcgtcctcgccaccggcgacttcaagatggaccagctcccgctcgacggc
cgcatcaccgacctgcgcgctttcgcccggttgggagaagagggggtcgacctgttcctc
gtcgactccaccaacgcggacgtccccggcttcacgccgaccgagcgcggcatcgggccc
gtgctcgaccaggtcatcagcaagtcgccgcgccgcgtcatcgtcgcgagcttctcgagc
cacgtccaccgcgtgcagcaggtcgtggatgccgccgccgcgaacggtcgccgcgtcgcc
ttcctcggccgcagcatggtccgcaacatgaccatcgccgagaacctcgggtacctcaac
gtcccggacggcgtgctcatcgactacaagaaggccaaggacctgcccgacgaccgcatc
gtctacatgtccaccggttcgcagggcgagccgatggcggtgctctcgcgcatggccaac
ctcgagcacgcgatcgagccggggccgggtgacaccgtcatcctcgcgtcgagccagatc
cccggcaacgagaacgcgatctaccgcgtcatcgacgggctgaccaagctgggcgccaac
gtcgtgcacaagggcaacgccaaggtgcacgtttcgggtcacgccgcggccggcgagctg
ctctactgctacaacatcctcaagccccgcaacgtgctgccggtgcacggcgaataccgc
cacctcatggccaacgccaagctcgcgcaggacaccggcgttccgcaggagcgcacgatc
ctcgccgagaacggcaccgtcgtcgacctgaaggacggcgtcgcggaggtcgtcggccag
ctcgacatcggattcgtgtacgtcgacggctcgaccgtgggcgagatcaccgacgccgat
ctgaaggaccgccggattctgggtgaagagggcttcatctcggtcatcgtcgtcgtggac
ggcaagacgggacgcgtggtgagtggcccggacatccacgctcgcggtgtcgccgaggac
gatgcggtgttcgagagcgtcaaaccgaagatcgcggcggcactcgcggaggccgtgcag
tcgggaacgcgcgacaaccacgcgctgtcgcaggtcgtccgccgcacgatcggccgctgg
gtcaaccagtcgctgcgtcggcgtcccatgatcgtgcccgtcgtcatcgaggcctga
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