Microbacterium sp. SGAir0570: C1N74_10065
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Entry
C1N74_10065 CDS
T07987
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mics
Microbacterium sp. SGAir0570
Pathway
mics03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mics00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1N74_10065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mics03019
]
C1N74_10065
03009 Ribosome biogenesis [BR:
mics03009
]
C1N74_10065
Enzymes [BR:
mics01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1N74_10065
Messenger RNA biogenesis [BR:
mics03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1N74_10065
Ribosome biogenesis [BR:
mics03009
]
Prokaryotic type
rRNA helicases
C1N74_10065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCR40721
LinkDB
All DBs
Position
complement(2124050..2125858)
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AA seq
602 aa
AA seq
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MSTSAEQPVPESADEPPVITFRDLGLGEQVLKALSDVGYETPSAIQAATIPTLLEGRDVV
GLAQTGTGKTAAFALPILDRLDLTQKTPQALVLAPTRELALQVCEAFEKYASRTRGVHVL
PVYGGQGYGVQLSALRRGVHVIVGTPGRIMDHLDKGTLDLSELKYLVLDEADEMLKMGFA
EDVETILADTPDTKQVALFSATMPAAIRRMSKQYLNDPEEITVASKTTTSSTITQRYLIV
SYQQKIDALTRILEVENFEAMIVFARTKSATEEVAEKLRARGYSAAAINGDVAQVQRERT
VNQLKSGKLDILVATDVAARGLDVERISHVVNFDISTDTESYVHRIGRTGRAGRTGDAIS
FVTPRERGLVNAIERATRQPLTQMQLPSVDEVNVTRLSRFDDRITAALEDTDRIERFRDI
VAHYVRHHDVPEVDVAAALAVVAQGETPLLLEPDPEPRARAPREDRAPRSFDRDDRDGRP
ERRPRASNPNMTTYRIAVGKRHRVEPRQIVGALANEGGLSRGDFGAIQIRPDFSLVELPN
DMPQSTLDRLADTRISGKAIEIRVDTGGPSRSSRSRYDRDDRPRERDDRPARKPRHRSEP
SD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacttctgctgaacagcctgtacccgagtccgccgacgagccgcccgtcatcact
ttccgcgacctcgggctgggggagcaggtgctcaaggcactctccgacgtgggctacgag
accccgtcggcgatccaggcggcgacgatcccgacgctcctcgagggacgcgacgtcgtc
gggctcgcgcagaccggtaccggcaagaccgccgccttcgcgctgccgatcctcgaccgg
ctcgacctgacgcagaagacccctcaggctctcgtgctggctccgacgcgcgagctcgcg
ctgcaggtctgcgaagcgttcgagaagtacgcgtcccgcacccgcggcgtccacgtgctg
ccggtctacggcggccagggatacggtgtgcagctctcggcactgcgccgcggtgtccac
gtgatcgtcggtacgcccggccgcatcatggaccacctcgacaagggcacgctcgacctg
tccgagctgaagtatctcgtgctcgacgaagccgacgagatgctgaagatgggcttcgcc
gaggacgtcgagacgatcctcgccgacacccccgacacgaagcaggtcgcgctgttctcg
gcgacgatgcccgcggccatccgccggatgtcgaagcagtacctcaacgaccccgaagag
atcaccgtcgcgtcgaagacgacgacctcctcgacgatcacccagcgctacctgatcgtg
tcgtaccagcagaagatcgacgccctcacccgcatcctcgaggtcgagaacttcgaggcg
atgatcgtcttcgcccgcacgaagagcgcgaccgaggaggtcgccgagaagctgcgcgcc
cgcggttactccgccgccgcgatcaacggtgacgtcgcccaggtgcagcgcgagcgcacc
gtcaaccagctgaagtcgggcaagctcgacatcctggtcgccacggatgtcgctgcccgc
ggcctcgacgtcgaacgcatctcgcacgtggtgaacttcgacatctcgaccgacaccgag
tcgtacgtccaccgcatcggccgcaccgggcgtgccggccgcaccggcgacgcgatcagc
ttcgtcaccccgcgcgagcgcgggctcgtgaacgcgatcgagcgtgcgacgcgccagccg
ctgacgcagatgcagctgccgagcgtcgacgaggtcaacgtcacgcgcctgtcgcgcttc
gacgaccgcatcacggcggccctggaagacaccgaccgcatcgagcgattccgagacatc
gtcgcacactacgtccgtcaccacgacgtgcccgaagtggatgtcgccgccgcgctcgcc
gtcgtcgctcagggcgagaccccgctgctgctcgaacccgaccccgagcctcgcgcccgc
gctccgcgcgaggaccgcgccccccgatcgttcgatcgcgacgaccgcgatgggcgtccc
gagcgtcgcccgcgcgcaagcaacccgaacatgacgacctatcgcatcgcggtcggcaag
cgtcaccgcgtcgagccccgtcagatcgtcggcgcgctcgcgaacgagggcggtctgagc
cgcggcgacttcggcgccatccagatccgtcccgatttctcgctcgtcgagctgccgaac
gacatgccccagtcgacgctcgaccgcctggccgacacccgcatctcgggcaaggcgatc
gagatccgcgtcgacacgggcggaccgagccgcagctcgcggagtcgatacgaccgcgac
gatcgcccgcgcgagcgcgacgaccgcccggcgcgcaagccgcgccaccgctcggagccc
agcgactga
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