Microbulbifer sp. THAF38: FIU95_08995
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Entry
FIU95_08995 CDS
T06274
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mict
Microbulbifer sp. THAF38
Pathway
mict03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mict00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU95_08995 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mict03019
]
FIU95_08995 (rne)
03009 Ribosome biogenesis [BR:
mict03009
]
FIU95_08995 (rne)
Enzymes [BR:
mict01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FIU95_08995 (rne)
Messenger RNA biogenesis [BR:
mict03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FIU95_08995 (rne)
Ribosome biogenesis [BR:
mict03009
]
Prokaryotic type
rRNA processing factors
FIU95_08995 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QFT54686
UniProt:
A0A5P9EVD7
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All DBs
Position
complement(2032554..2035475)
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AA seq
973 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRTRQQKKANIYKGKITRVEPSLEAAFVDY
GEERHGFLPLKEISREYFLKQPKDIEGRIKIKDVVKEGMEVVVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDERSELRDALASVDVPSGMGIIVRTAGVGRSGEE
LQWDLNYLLQLWSLIKESADKNSAPEFLFQESNVIIRAIRDYMRDDIGEVIVDDADAFKL
VKGFAEQVMPHYAHKVKFYEDSIPLFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETARSINLEAADEIARQLRLRDMGGLVVIDFIDMQSKSNQREVE
KRMEKALSMDRARVQVGRISRFGLLEMSRQRLRPSLGETTFRVCPRCSGQGTIRGTKSLA
LSILRLVEEEAKKERSAEIRAITPVNVATYLLNEKRKAISQIEARNNTRVVVVPNSEIET
PHFEVQRLRDDDTSTLETSYKISGSVEETVTKKEEQPKRPLAQPTVQPLAHAAPAPTPEK
KPEPGLFSRLISAIAELFTSKEEEPKKHQKSQNRGKDYQRNRNRNRNQRGGNRGNRGERQ
TRRRDDRREDAKSEDQREPKQTAKPYDERDSGADRGEGQRRRRRRRSGDNRRKDENRGNI
SDSNTNENATQVEESTDQQRPSRRPSNVRGRPQARRRGRRAENTAATAVAQSQEELNREV
NEAIDEAESEARKSRDTTAKSSSDTSSSSNTSASEVPRPKAKHSEQKTPEPTQASKPKPA
EKAPTQAPIASEATAAARVKAEPTTSATETQQAVTPAATKEAPQATAKASQEATSTKTPA
SAKTAEAIVEQQDAEETALQEASEAAKATEKQSDAIAREEIMAEEAIASEEINAPATQGR
AGNDPRINPKPLLELAIVTEHREMGSQQPLDTAQPAAIEHSPRALARPANDPRMARRVAQ
TQTDTDHNSAEAG
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctgatcaacgcaacccagcctgaggagttgcgtgtagccctggtagat
ggccagtggctctatgacttggatattgaaaatcgcacccgccagcagaaaaaagccaac
atctacaaaggtaaaattacccgcgtagaaccctcgctcgaagccgcatttgtcgactat
ggcgaagagcgccacggcttccttcccctgaaagaaatctcccgcgaatacttcctcaaa
cagcccaaggacatcgaaggccgtatcaagattaaagatgtcgttaaagagggaatggag
gtcgtcgttcaggtcgataaggaagagcgcggtaacaaaggcgcagccctgaccaccttt
atcagcctcgccgggcgctacctggtactgatgccaaacaacccccgtgccggtggtatc
tctcgccgtattgaaggtgacgagcgatccgagctacgcgatgccctggcaagcgtagac
gtcccctccggcatgggcattatcgtgcgcaccgccggtgttggtcgcagcggcgaagaa
ctgcaatgggatctcaattatctcctgcagctgtggagcctaatcaaagaatcagcggac
aagaatagcgcacccgaattcctcttccaggaaagcaatgtaatcattcgggcgattcgc
gattacatgcgcgatgatattggcgaagtcattgtcgacgatgcagatgccttcaagcta
gtaaagggctttgccgagcaggtcatgccccactacgcccataaggtaaagttctacgaa
gatagtattccgctcttcaaccgctaccaaattgaaagccagatcgagaccgcctttgaa
cgtgaagtgaaacttccctccggcggctccatcgttatcgatgttaccgaggcgctagtc
tctatcgacatcaactcctcccgtgccaccaaaggcggcgacatcgaggagaccgcgcgc
agtatcaacctggaagccgccgacgagatcgctcgccagctgcgcctgcgcgacatgggc
ggcctggtagtgatcgactttatcgacatgcagagcaaatccaaccagcgcgaagttgag
aagcgcatggaaaaagctctcagcatggaccgcgcacgcgtacaggttggccgtatctcc
cgcttcggcctgctggaaatgtcccgtcagcgcctgcgtccatctcttggcgaaaccacc
ttccgcgtctgcccccgttgtagcggccaaggtaccattcgcggcaccaaatccctggcc
ctctcaatcctgcgcctggtggaagaagaagccaagaaagagcgcagcgcagagattcgc
gcaatcactccggtgaatgtcgccacctaccttctcaacgagaagcgcaaggctatttcc
cagattgaagcgcgcaacaatacccgtgtagtggttgtacccaactcggagattgaaacc
ccccactttgaagtgcagcgcctgcgcgatgacgatacctctaccctcgaaacctcctat
aaaatttctggaagcgttgaggaaaccgtcaccaagaaagaagagcagcctaagcgccca
ctggctcaaccgactgttcagccgctcgcacacgctgcaccggcacccactcccgaaaag
aaaccggagccgggtctgtttagccgtctgattagtgctattgcggagcttttcaccagc
aaagaagaagagcccaaaaagcatcaaaagtcgcaaaaccgcggcaaagattaccagcgc
aaccgcaaccgtaatcgcaaccagcgcggtggcaaccgaggaaaccgcggtgagcgccag
acacgccgcagagacgatcgccgcgaagacgccaagagcgaagaccagcgcgagcccaag
cagaccgcaaagccgtacgatgagcgcgacagcggagcggatcgtggcgaggggcagcgt
cgccgtcgtcgtcgtcgcagcggggacaaccgccgcaaggacgaaaaccgcggcaacatc
tccgacagcaacaccaatgaaaatgctactcaagtagaagagagcactgatcagcagcgt
ccgtcacgccgccccagcaatgttcgcggccgcccgcaagctcgacgccgtggccgtcgt
gcagaaaacactgctgccacagccgtagcccaaagtcaggaagagctgaatcgcgaagtc
aatgaagccattgacgaagcagagagcgaagccagaaaatcccgggataccacggccaaa
agctccagcgacacttctagctccagcaacacttctgcaagcgaggtgccaagacccaaa
gccaagcacagtgaacagaagacacccgaacccactcaggcttccaaacccaagcccgca
gagaaagcgcctacgcaagcgcccattgcgtcagaagcaactgcagcggccagagtaaaa
gcggagccgaccacttccgcaacggagacccagcaagcggtaacacctgctgcaaccaag
gaagccccccaggcaaccgcaaaggcttctcaagaagccactagcaccaaaacaccggca
agcgctaaaaccgcggaagccattgtggagcagcaggacgctgaggagacggccctgcag
gaagccagcgaggccgcaaaagcaactgaaaagcaaagtgatgctattgccagagaagag
atcatggccgaagaagctatagcttccgaggaaatcaatgctccggcaacccaggggcgc
gcaggcaatgacccgcgcatcaaccccaaaccattacttgagctggctatcgttaccgag
caccgcgagatgggctcacagcaaccactggataccgctcaaccagcggccattgagcac
agcccacgcgccctggcacgcccagccaacgatccgcgcatggctcgccgggtagcgcaa
acacaaactgatactgaccacaactcagcagaagctggctaa
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