Microbulbifer sp. THAF38: FIU95_15955
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Entry
FIU95_15955 CDS
T06274
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mict
Microbulbifer sp. THAF38
Pathway
mict03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mict00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU95_15955 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mict03019
]
FIU95_15955 (rhlB)
Enzymes [BR:
mict01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIU95_15955 (rhlB)
Messenger RNA biogenesis [BR:
mict03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU95_15955 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QFT56045
LinkDB
All DBs
Position
complement(3534698..3536227)
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AA seq
509 aa
AA seq
DB search
MIGKLFRRSSSTEEKSPRQGDERSQQRKSGQNPSNKPRKGQKAEAKSGQGEGSSRRGSGK
GSHRGRQRTHTPKSEAATPWSLDDFQIPEQEGKVRFHDLGLPAELMRGIHDLGFQYCSPI
QGRSLPHTLNGHDLVGKAQTGTGKTAAFLITVIDDLLRHPFDGERYAGEARSLIIAPTRE
LVMQIADDAKALCKYTGLEIHTLVGGMDYEKQQRNLNERLVDILVATPGRLLDFVGNRDC
FLDQVEVLVIDEADRMLDMGFIPQVRRIVRQTPRKTHRQTMFFSATFTPEVDDLVEQWTE
EPVVVEIEPERVATDSVEQHVYLAASEEKYALLYNILQRDEVDSLIVFANRRDQCRRLHE
HLLAHGISAGLLSGEVAQNKRVRTLDDFKSGKTKVLVATDVAGRGIHIDGISHVVNFTLP
EEPEDYVHRIGRTGRAGKTGTSISFACEDDAMRLEPIEQLLGQKLKCEVPPEELLQEPPK
VEVRRSGGDRDHRSGHSNRRGGGRGRSRY
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgataggaaagttgttccgtcgttcctcctctactgaggagaagagcccccgccaggga
gatgaacgctcccagcagcgtaaaagtggccagaatccctccaataagccccgtaagggc
caaaaagccgaggcgaaatctggtcaaggtgaggggagctcacgccggggcagcggcaaa
ggctcccatagagggcgccagcgcacccatactcccaagtcggaagcagcaacgccctgg
tctctggacgactttcagattccagaacaggagggcaaggtccgttttcatgatctgggt
ttaccagcggaattgatgcgcggtattcacgacctgggattccagtactgctcgccgatc
caggggcgttctctacctcataccctgaatggccacgacctggtgggtaaggcccagaca
ggtactggcaagaccgcagccttcctgatcaccgtaattgatgatctgttgcgccacccc
tttgatggggagcgctacgccggcgaggcccgctccctgattatcgcgcctacccgcgag
ttggtgatgcagatcgccgatgatgctaaagcgctgtgcaaatacacgggtctggagatt
catactctggttggagggatggattacgagaagcagcagcgtaatctcaatgagcgttta
gtggatattttggtggcgacaccgggtcgtctgttggactttgtcggcaaccgcgattgc
ttcctggatcaggtagaggtgctggtgattgatgaagctgaccgcatgctggatatgggc
ttcattccccaggtgcgccgaatcgttcgccagacaccccgcaagacccatcgccagacc
atgtttttctctgccaccttcacccccgaagtcgatgacctggtggagcagtggaccgaa
gagccggtagtggtagaaatcgaaccggagcgggttgccaccgattccgtcgagcagcat
gtctatttggccgctagtgaggagaagtatgcacttctctacaatatcttgcagcgggat
gaggtggacagcctgattgtcttcgccaaccgccgggatcagtgtcgccgcttgcatgaa
cacctgctcgcccacggtatttccgccggcctactctccggcgaagtggcacagaacaag
cgcgtgcgtactctcgatgacttcaagtcgggtaaaaccaaggtgttggtagccacggat
gtggccggccgtggtatccatatcgacggtattagtcatgtcgtgaacttcacccttccg
gaagagccggaggactacgtgcatcgtatcggccgtacagggcgagccggtaagacgggt
acttccatcagcttcgcctgtgaagatgatgccatgcgattggagccaatcgaacagcta
ctagggcagaagctcaaatgcgaggtgccaccggaagagctactacaagagcctccaaaa
gttgaggtgcgtcgcagtggtggcgatagggatcatcgtagtgggcacagtaatcgccgc
ggtggtggccgagggcgctctcgctattga
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