Micrococcus sp. HOU01: SOY78_03690
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Entry
SOY78_03690 CDS
T10249
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
micu Micrococcus sp. HOU01
Pathway
micu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOY78_03690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micu03019
]
SOY78_03690
03009 Ribosome biogenesis [BR:
micu03009
]
SOY78_03690
Enzymes [BR:
micu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOY78_03690
Messenger RNA biogenesis [BR:
micu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOY78_03690
Ribosome biogenesis [BR:
micu03009
]
Prokaryotic type
rRNA helicases
SOY78_03690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
adh_short
CMS1
ResIII
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WRQ44322
LinkDB
All DBs
Position
797323..799479
Genome browser
AA seq
718 aa
AA seq
DB search
MSDILDPQTTAEAAPELAEAEQEATGTVPQVDAAEPAAPEAPAEPDAPEAPAEPAGPTFL
DLGLDARVLAAVEDLGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLA
ETTDVTGRADTPQVLALAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLR
RGAQVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTKQT
ALFSATMPPTIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETE
EHDGVIAFVRTRAGTEELAQKLTRAGFKAVAISGDVAQKQREKTVEDLKAGRVDILVATD
VAARGLDVERISLVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERT
TRQQVEEMAVPSVADVNAARKRRFADGITRTLERASEEELAVFGEIVAAYVDEHEVEPAR
VAAALGMMAQGGRPLLAREQEIPSGGGRGRKDRDGGREGGRDGGRERGASDGRGSRGPAR
EPAAGNATYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPADLTSA
QLEAAANAEINGRRLDLRKDTGRPTRAERDGEDRGERRGGFRKDRGERGERGGFRGDRDG
GQRGGYRKDRDNRGSREDRGGFRKDRDNRSFRGDRRGRPGGRKPRWGAQERSDRGARR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacatcctcgatccccagaccaccgccgaggccgcccccgagctcgccgaggcg
gagcaggaggccaccgggaccgtcccgcaggtcgacgccgccgagcccgccgcccccgag
gccccggccgagcccgacgcccccgaggctcccgccgaaccggccggccccaccttcctg
gacctcggcctggacgcccgcgtgctggccgccgtcgaggacctgggctacacccgcccc
tcgccgatccaggaggcgaccatcccgctgctgctggacggccgcgacgtcgtgggcctg
gcccagaccggcaccggcaagaccggcgcgttcgcgctgccggccctgtcccgcctcgcc
gagaccacggacgtgaccgggcgcgcggacaccccgcaggtgctcgcgctcgccccgacc
cgcgagctcgccctccaggtggccgacgccttcgacagctacgccaagcatctcgacgac
gtctccgtgctcgcggtctacggcggctccccgtacggcccgcagctggccggactgcgg
cggggcgcgcaggtcgtcgtcggcacgccgggccgcgtgatcgaccacctcgagcgcggc
tcgctggacctctccgacctgcagaccctcgtgctggacgaggcggacgagatgctgcgc
atgggcttcgcggaggaggtggaccgcatcctcgcctccaccccggacacgaagcagacc
gcgctgttctccgccaccatgcccccgaccatccgccgcatctccgcccagtacctgaac
gccccggaggaggtggccgtcgcccgtcagtcgacgacgtccgccacgatccgccagcgc
tacctgcaggtgggtcaccagtggaagttcgaggccctgagccggatcctcgagaccgag
gagcacgacggcgtcatcgccttcgtgcgcacccgtgccggtaccgaggagctcgcccag
aagctcacgcgcgccgggttcaaggccgtggccatctccggcgacgtcgcccagaagcag
cgcgagaagaccgtggaggacctgaaggccggccgcgtggacatcctcgtggccaccgac
gtcgccgcccgcggcctcgacgtcgagcgcatctcgctcgtggtcaactacgacattccg
caggacgcggagtcctacgtgcaccgcatcggccgcaccggccgcgccggccggcagggc
gacgccgtgctcttcatgaccccgcgcgagcgcttcctgctcaagcagatcgagcggacc
acccgccagcaggtcgaggagatggccgtgccctccgtcgccgacgtcaacgcggcccgc
aagcgccgcttcgccgacggcatcacccgcaccctcgagcgcgcctcggaggaggagctg
gcggtgttcggtgagatcgtcgccgcgtacgtcgacgagcacgaggtcgagccggcgcgt
gtggccgccgcgctgggcatgatggcccagggcggccgcccgctgctggcccgcgaacag
gagatcccgtccggcggcggccggggccgcaaggaccgcgacggcggtcgcgagggtggg
cgcgacggcggccgtgagcgcggcgcgagcgacggccgcggctcgcgtggcccggcccgg
gagcccgcggccggcaacgcgacgtactggatcgccgtcggccaccaggaccgtgtgcgg
ccgggcaacatcgtgggcgcgctggcgaacgaggtgggcctgcccgcctcggccatcggc
gcgatcgacctgcgtggcaaccactcgctcgtcgagctgccggcagacctgacctcggcc
cagctcgaggccgcggccaacgccgagatcaacggccgtcgcctcgacctgcgcaaggac
accggccgcccgacccgcgccgagcgcgacggcgaggaccgcggtgagcgccgcggcggc
ttccgcaaggaccgcggcgagcgcggcgagcgcggcggcttccgcggggaccgcgacggc
ggccagcgcggcgggtaccgcaaggaccgggacaaccgcggctcccgcgaggatcgtggc
ggcttccgcaaggaccgggacaaccgcagcttccgtggcgaccgcaggggacgccccggc
ggccgcaagccccgctggggcgcccaggagcgctcggatcggggcgcccgccgctga
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