Micrococcus sp. HOU01: SOY78_03850
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Entry
SOY78_03850 CDS
T10249
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
micu Micrococcus sp. HOU01
Pathway
micu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
micu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SOY78_03850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
micu03021
]
SOY78_03850
03400 DNA repair and recombination proteins [BR:
micu03400
]
SOY78_03850
Enzymes [BR:
micu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOY78_03850
Transcription machinery [BR:
micu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SOY78_03850
DNA repair and recombination proteins [BR:
micu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SOY78_03850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WRQ44348
LinkDB
All DBs
Position
825484..829380
Genome browser
AA seq
1298 aa
AA seq
DB search
MSTDNSFGLMRIGLATAEDIRRWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
ACGKYKRVRFKGIICERCGVEVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEEARHRDLANLQAEYDQETRVLADQRDSDIAAVAADLEKD
LAKLESEGAKAAEKKKARDAADKTMAQIRKRADAELDRKEQVWDRFKNLKVADLEGDEGL
YRAMRDKYGQYFEGSMGAEAIQRRLQTFDLEAESEMLRETIKTGKGQRKTRALKRLKVVN
AFLTTDNSPEGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERFR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCSAFNADFDGDQ
MAVHLPLSPEAQAEARLLMLSSHNILKPSDGRAVAVPAQDMIIGLNHLTTVRPDEVGAGN
LYATVGEAIMAFDGGDLHLNAPARIGVEGFVPSAAVPAPEGWSEGEIALIETTLGKVLFN
ELLPDDYPWLDKQATKGTLGQLVNNLAERYPMVVTAQTLDNLKDAGFHWGTWSGVTVAIS
DITSDFDKAAIMEGYEEQAQRVQQQYDKGLIADDERRSELIDIWNKATDEVAAAMKDGLP
ELNTINRMVSSGARGNWLQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFSATH
GARKGLADTALKTANSGYLTRRLVDVSQDVIVREDDCGTERGLSVTIAAPNADGELVAHE
QVENSAFARTLAQDVTGEDGTVLASAGADVGDVLIGELVAAGVTEIKVRSVLTCESAVGT
CAKCYGRSMATGQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQ
ELFEARTPKGVAPISEVAGRVTIEDTETSVRLLLTPDDGSEEIAYPVLRRARILVADGEH
VPVGTQLVAGAVDPKQVLRVLGPRAAQRFLVDEVQNVYQSQGVGIHDKHVEVIVRQMLRR
ITVIESGDTDLLPGELTDRARFVAANRAAVAEGRQPASGRDELMGITKASLATDSWLSAA
SFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLDRYTKTVVEPTEEAKANLFA
SPAGFADFDYPGLDQSLGENDFHAVSLDNYDRGGDFRA
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgtccactgacaactctttcggcctgatgcgcatcggcctggccacggcggaggacatc
cgccgctggtcctacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacggactcttctgcgagaagatcttcggccccacccgtgactgggagtgc
gcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctcgaaggtgcgccgcgaccgcatgggccacatcgagctggctgcgccg
gtcacccacatctggtacttcaagggcgtgccctcgcgcctgggctacctgctggacctg
gcgccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacctcggtggac
gaggaggcccggcaccgcgacctggccaacctccaggccgagtacgaccaggagacccgt
gtcctggccgaccagcgtgactccgacatcgccgcggtggccgccgacctcgagaaggac
ctggccaagctggagtccgagggcgccaaggccgccgagaagaagaaggcccgcgacgcc
gcggacaagaccatggcgcagatccgcaagcgcgcggacgcggagctggaccgcaaggag
caggtctgggaccgcttcaagaacctcaaggtcgccgacctcgagggcgacgagggtctg
taccgcgccatgcgggacaagtacggccagtacttcgagggctcgatgggcgcggaggcg
atccagcgtcgcctgcagaccttcgacctcgaggccgagtccgagatgctgcgtgagacc
atcaagacgggcaagggccagcgcaagacccgcgccctgaagcgcctgaaggtcgtcaac
gcgttcctgaccacggacaactcgcccgagggcatggtcctggacgccgtcccggtgatc
ccgccggagctgcgtccgatggtgcagctggacggcggccgcttcgcgacctccgacctc
aacgacctgtaccgtcgcgtgatcaaccgtaacaaccgcctgaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgtggactcg
ctgttcgacaacggccgccgcggccggccggtgaccggcccgggcaaccgcccgctcaag
tcgctctccgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtggactactcgggccgctcggtcatcgtggtgggtccccagctcaagctgcaccag
tgcggcctgccgaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgtctc
gtggacctgaaccacgcgcagaacatcaagtccgccaagcgcatggtggagcgcttccgt
ccgcaggtctgggacgtgctcgaggaggtcatcaccgagcacccggtcctgctgaaccgc
gcccccaccctgcaccgtctgggcatccaggccttcgagccgcagctcgtggagggcaag
gccctgcagctgcacccgctggtctgctccgcgttcaacgcggacttcgacggcgaccag
atggcggtccacctgcccctgtcgccggaggcccaggccgaggcgcgcctgctcatgctc
tcgagccacaacatcctgaagccctcggacggccgcgcggtcgccgtgccggcccaggac
atgatcatcggcctgaaccacctcaccacggtgcgtccggacgaggtcggcgcgggcaac
ctgtacgcgaccgtcggcgaggccatcatggcgttcgacggcggcgacctgcacctgaac
gcgcccgcacggatcggtgtcgagggcttcgtgccgtcggcggccgtgccggcccccgag
ggctggtccgagggcgagatcgccctcatcgagaccaccctgggcaaggtgctgttcaac
gagctgctgccggacgactacccgtggctggacaagcaggcgaccaagggcaccctcggc
cagctggtcaacaacctggccgagcgctacccgatggtcgtcaccgcgcagacgctggac
aacctcaaggacgccggcttccactggggcacctggtcgggtgtgaccgtggcgatctcg
gacatcacctccgacttcgacaaggccgccatcatggagggctacgaggagcaggcccag
cgcgtgcagcagcagtacgacaagggcctgatcgcggacgacgagcgtcgctccgagctg
atcgacatctggaacaaggccaccgacgaggtcgccgcggccatgaaggacggcctgccg
gagctcaacaccatcaaccgcatggtgtcctccggtgcgcgaggcaactggctccaggtg
cgccagatcgcgggcatccgcggcctcgtggccaacccgaagggtgagatcatcccgcgt
ccgatcaagtcctcgtaccgcgagggcctgtccgtgctcgagtacttctccgccacccac
ggcgcccgcaagggcctcgcggacaccgcgctgaagaccgcgaactcgggctacctgacc
cgtcgtctcgtcgatgtgtcccaggacgtcatcgtccgcgaggacgactgcggcaccgag
cgcggcctgtccgtcacgatcgccgccccgaacgccgacggcgagctggtggcccacgag
caggtcgagaactcggccttcgcccgcacgctggcccaggacgtcacgggcgaggacggc
acggtgctggcctcggccggtgcggacgtgggcgacgtgctgatcggcgagctggtggcc
gccggcgtcacggagatcaaggtccgctcggtcctgacctgcgagtccgccgtgggcacc
tgcgcgaagtgctacggccgctccatggccaccggccagctggtggacatcggcgaggcc
gtcggcatcatcgcggcccagtcgatcggtgagccgggcacccagctcaccatgcgcacg
ttccacaccggcggtgtggcctcggccgacgacatcacgcagggtctgccccgcatccag
gagctcttcgaggcccgcaccccgaagggcgtggccccgatctccgaggtcgccggccgc
gtgaccatcgaggacaccgagacgtccgtgcgcctgctgctcacgccggacgacggctcc
gaggagatcgcctacccggtgctgcgccgtgcgcgcatcctcgtggccgacggcgagcac
gtgccggtgggcacgcagctcgtggccggcgccgtggacccgaagcaggttctgcgcgtg
ctcggcccgcgggccgcgcagcggttcctcgtggacgaggtgcagaacgtgtaccagtcc
cagggcgtgggcatccacgacaagcacgtggaggtcatcgtccggcagatgctgcgtcgc
atcaccgtcatcgagtccggtgacaccgacctgctgccgggcgagctcacggaccgggcg
cgcttcgtggccgccaaccgtgccgccgtcgctgagggccgccagccggcctccggccgc
gacgagctgatgggcatcacgaaggcctcgctggccacggactcgtggctgtcggccgcg
tccttccaggagacgacccgcgtcctgacgcaggcggccatggagggcaagtccgacccg
ctgctgggcctgaaggagaacgtgatcatcggcaagctgatcccggccggcacgggcctg
gaccgctacacgaagaccgtcgtggagccgacggaggaggcgaaggccaacctgttcgcc
tcgccggccggcttcgcggacttcgactacccgggcctggaccagtcgctcggcgagaac
gacttccacgccgtctcgttggacaactacgaccgcgggggcgacttccgcgcctga
DBGET
integrated database retrieval system
