Microbulbifer sp. YPW1: HUW35_01715
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Entry
HUW35_01715 CDS
T10374
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
micy Microbulbifer sp. YPW1
Pathway
micy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUW35_01715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micy03019
]
HUW35_01715
03009 Ribosome biogenesis [BR:
micy03009
]
HUW35_01715
Enzymes [BR:
micy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUW35_01715
Messenger RNA biogenesis [BR:
micy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUW35_01715
Ribosome biogenesis [BR:
micy03009
]
Prokaryotic type
rRNA helicases
HUW35_01715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
HEM4
UvrA_inter
PRD1_P5_spike_N
Motif
Other DBs
NCBI-ProteinID:
QKX15820
LinkDB
All DBs
Position
complement(379081..380847)
Genome browser
AA seq
588 aa
AA seq
DB search
MTDNSAPAGFDQLGLPTQILEAVTKLGYETPSPIQAQTIPSLLEGRDVLGQAQTGTGKTA
AFALPLLAGLDLKSKRPQALVLAPTRELAIQVAEACQSYAANLKGFHVAPIYGGADYRGQ
IQQLKRGVQLVVGTPGRVMDHMRKGTLDLSGLKTLVLDEADEMLRMGFIDDVEWVLEQVP
AERQIALFSATMPREIAKIARDHLNNPVDVKIKVKTETADTIRQRYWPVGGLHKMDALTR
ILEAEPVDGTIIFVRTKNATVEIADKLAARGFASSALNGDMAQNLREQVIDKLKKGKLDI
VVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLR
VIEKATKKPIERLELPTAKAVNASRMEKFRQRITDTLQGREDLAPFRDLVEQYLAENEMD
PLDVAAALAAMAQGDSPLLLDEREPKQRDFNDRNERSDRRDGDDRKRGKKGFDKQKHVGP
PDEGKERFRIEVGRDHGVRPGSVVGAIANEVDLDSSYIGRIEIYPDYTTVDLPEGMPKEI
FNHLKKVRVNGRPMNIAKFTDQGGSGEGRKGGKPSFAAKKRKPKQPRD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaattctgcacctgctggttttgaccagctgggcctgccgacacaaattctc
gaagccgttaccaaactgggttatgaaaccccatccccgatccaggcacagaccattccg
tcactgctggaaggccgcgacgtgctgggccaggcccagaccggtaccggcaaaactgcc
gccttcgcactgccgctgctggccgggctcgacctgaagagcaagcgcccccaggcactg
gtactggcaccgacccgtgaactcgccatccaggtggccgaggcctgccagtcttacgcc
gccaatctcaaaggttttcacgttgcccctatttacggtggcgccgactaccgcggccag
atccagcaactgaagcgcggtgtgcagctggttgtgggtaccccgggccgagtgatggac
catatgcgcaagggcaccttggacctgtccggtctcaagaccctggtgctggatgaagcc
gacgaaatgctgcgtatgggcttcatcgacgacgtggagtgggtgctcgagcaggttccc
gctgagcgccagatcgcgctgttctccgccaccatgccgcgggagattgccaagattgcg
cgcgatcacctgaacaacccggtagacgtgaagatcaaggtcaagaccgagaccgccgat
accatccgccagcgctactggccggtgggcggcctgcacaagatggatgcgctgacccgc
atcctcgaagcggagcctgttgatggcaccatcatttttgtgcgcaccaagaacgctacc
gttgagattgccgacaagctggcagctcgcggatttgccagctctgccctgaacggcgac
atggcgcagaacctgcgcgagcaggtgatcgacaagctgaagaaaggcaagctggatatc
gtggtagccaccgatgtggcggcccgtggtctggacgtgaaacgtatcagtcacgtgatc
aactacgatattccttacgataccgaagcctatatccaccgtatcggccgtaccggccgt
gccggtcgcgaaggcgatgcgatcctgttcgtggcaccgcgcgagcgccgcatgctgcgt
gtgatcgagaaggcgaccaagaagcccatcgaacgcctcgaactgccgactgccaaggcg
gtaaacgcctcgcgtatggagaagttccgtcagcgtattaccgacaccctgcagggccgt
gaagacctggcgccgttccgcgatctggtggagcagtacctggccgaaaacgaaatggac
ccgctggatgtagctgctgcactggccgccatggcccagggcgacagcccgctgctgctg
gacgagcgcgagccgaagcagcgcgactttaatgatcggaacgagcgcagtgaccgccgc
gacggcgacgaccgcaagcgcggcaagaaaggctttgataagcagaagcacgttggtccg
cccgatgaaggcaaagagcgtttccgcatcgaagtaggccgcgaccacggtgtacgcccg
ggcagcgtagtgggtgccattgccaacgaagtggatctcgacagctcctacatcggccgc
atcgaaatctacccggattacaccaccgtggacctgccggaaggcatgcccaaggaaatc
ttcaaccacctgaaaaaggtgcgcgtaaacggccgcccgatgaacatcgccaagttcacc
gaccagggtggaagcggtgaaggccgcaagggtggcaagccgtctttcgccgctaaaaag
cgcaagccgaagcagccgcgtgactga
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