Microbulbifer sp. YPW1: HUW35_03615
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Entry
HUW35_03615 CDS
T10374
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
micy Microbulbifer sp. YPW1
Pathway
micy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUW35_03615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micy03019
]
HUW35_03615
Enzymes [BR:
micy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUW35_03615
Messenger RNA biogenesis [BR:
micy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUW35_03615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HI1480
CMS1
Motif
Other DBs
NCBI-ProteinID:
QKX16143
UniProt:
A0A7H8PW36
LinkDB
All DBs
Position
complement(856492..857931)
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AA seq
479 aa
AA seq
DB search
MLFEDLGLVPEISRAVAEQGYTQPTPIQEQAIPVVMRGGDVMAAAQTGTGKTAGFTLPLL
HKLSAGERARNNQVRALVLTPTRELAAQVFDNVQSYSQYLPMRHSVVFGGVKINPQMMRL
RGGADILVATPGRLLDLYNQRAIKFDKLETLVLDEADRMLDMGFIHDIKKILRVLPAKRQ
NLLFSATFSPEIRTLAKGLVNDPVEIDVSPRNSTTKTVSQKLHPVDKARKASLLCHLIKE
NGWHQALVFSRTKHGANRLAKQLEQSRIPAAAIHGNKSQNARTKALADFKSGKVQILVAT
DIAARGIDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSADEIKQLRDIEK
LIQKPIEREEIEGFEPDHQLPESGGKAARGAQVRRDGAARKKPSSRRGKPGNNGSGERSG
NGESRSGNRSGNRSDSRNNAQRTENGARGNGNRKPSGGGERGNRTGGNSDQRPRQRRAN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgttatttgaagacctcggcctagtgccggaaatttcccgcgccgttgcggagcagggc
tatacccaacccaccccgattcaggagcaggccattcccgtagtgatgcgcggtggcgat
gtaatggcggcggcacagaccggtaccggcaagactgccggctttaccctgcctctgctg
cacaagctgagcgccggtgaacgcgcgcgcaacaatcaggtgcgcgccctggtactgact
ccgacccgcgaactggcggcacaggtattcgacaatgtgcagagctacagccagtacctg
cccatgcgtcactcggtggtatttggcggggtcaaaatcaacccgcagatgatgcgcctg
cgcggcggtgccgacattctcgtggccacaccgggccgcctgctggatctgtacaaccag
cgcgcgatcaagttcgacaagctggaaaccctggtgctggacgaagctgaccgcatgctg
gacatgggctttatccacgacatcaaaaaaatcctgcgggtactgccggcgaaacgtcag
aacctgcttttctccgcgaccttctctccggaaatccgcaccctggccaaaggcctggtg
aacgacccggtagagatcgatgtaagcccgcgcaacagcaccaccaaaaccgtgagccag
aagttgcacccggtggacaaggcccgcaaggcctcgctgctgtgtcacctgatcaaggaa
aacggctggcatcaggcactggtcttcagccgcaccaagcacggtgccaaccgcctggcc
aaacagctggagcagagccgtatcccggcggcggcgattcacggcaacaagagccagaat
gcgcgcaccaaagccctggcagatttcaaaagtggcaaggtacagattctggtggcaacg
gatatcgccgcgcgcggtatcgatatcgatcagctgccgcaggtagtgaacttcgacctg
ccgaatgtgcccgaggattacgtgcatcgcatcggtcgtaccggccgtgccggcgccaac
ggacaggcggtgtccctggtatctgcagatgaaatcaaacagctgcgtgatatcgaaaaa
ctgattcagaagcccatcgagcgcgaagaaattgaaggctttgagccggatcaccagctt
ccggaatccggtggcaaggccgctcgaggcgcccaggtacgccgcgatggcgccgcgcgc
aagaagccttcgagtcgtcggggaaaaccgggcaacaatggctctggtgagcgttccggt
aacggtgaatcccgctcgggcaaccgctccggcaatcgttccgacagccgcaacaacgcc
cagcgtactgaaaatggtgcacgtggcaacggtaaccgcaagccgtctggcggtggtgaa
cgcggtaatcgcacgggcggcaacagtgatcagcgtccgcgccagcgccgcgcaaactga
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