Microbulbifer sp. YPW1: HUW35_10015
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Entry
HUW35_10015 CDS
T10374
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
micy Microbulbifer sp. YPW1
Pathway
micy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUW35_10015 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micy03019
]
HUW35_10015 (rnr)
03016 Transfer RNA biogenesis [BR:
micy03016
]
HUW35_10015 (rnr)
Enzymes [BR:
micy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HUW35_10015 (rnr)
Messenger RNA biogenesis [BR:
micy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUW35_10015 (rnr)
Transfer RNA biogenesis [BR:
micy03016
]
Prokaryotic type
tRNA degradation factors
HUW35_10015 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
RNase_R_N
OB_PDCD11
SAM_ARHGAP18_N
Motif
Other DBs
NCBI-ProteinID:
QKX17307
LinkDB
All DBs
Position
complement(2444489..2446762)
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AA seq
757 aa
AA seq
DB search
MSESPIAAFNPLDAKKYSNPIPAREFIMSLLEDNKEVLDRKKLAKVLDLSSEEQKEALRR
RLRAMERDGQIAFDRDAGYSLIKPEDLITGRVIGHPDGFGFLNSDESAEDLFLSDNEMLT
VFDGDIVEARVSGVDRRGRKTGVIVNVLERKTTHLVGRLQFEEGDYFLKPENSRLSHEID
LDRDQLMGAKPGQYISVEIIDFPNRRYNAFGRVTELLGDAMGPGMEIDVAIRSHDIPHQW
PQDALRAAKKLGDSVPEADKQHRADLRELPFVTIDGEDAKDFDDAVYCEQTPSGGWRLFV
AIADVSHYVAPESALDLEAQKRATSVYFPGRVVPMLPESLSNGLCSLNPHVDRLVMVCEM
TISKTGKMTDYTFSEGVIHSHARLTYNQVNAFITAPDSGLGRQTARKLKGTAPHIHALHD
LYSVLKQARTQRGALDFEKSEVQFVFTEDRKIDRIIPVIRNDAHKMIEEFMLSANVATAD
FLKRQKMPALYRVHDGPQDKKLTALRAFLTTKGLKLAGGNKPRPEHYDQLMSQIGERSDA
QTIRTMLLRSLSQAEYSMDNRGHFGLAYSAYAHFTSPIRRYPDLMVHRAIRSVIRQSKQR
STLGRALKFIIGKGKDSVQRFDSAPLLAPGKSYPYGKTAMQSLAMHCSNASRRADKASWD
VEAWLKCEYMQDFVGDVFQGVVASVTHFGLFIEIDGIQVEGLIHISALKNDYYHFDADRQ
CLIGEQRRKSFAIGDTIKARVVAVDMERRKIEFALAS
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatccccaatagctgcgtttaatccgctggacgccaaaaaatacagcaaccct
attcccgcgcgcgagttcattatgagcttgctcgaagacaacaaagaagtactcgaccgc
aaaaagctggcaaaagtgctggatctttccagcgaagagcagaaagaagctttgcgtcgc
cggttacgtgccatggagcgcgacggccaaatcgcattcgatcgcgatgcaggctacagc
ctcatcaaacctgaagacctgatcactggacgtgtcatcggtcatccggatggtttcgga
ttcctgaacagcgatgagtctgctgaagacctgttcctgtcggataacgaaatgctgact
gtgttcgacggagacatcgtcgaggcgcgcgttagtggcgtggatcggcgcgggcgtaaa
accggtgtgatcgtcaatgtgctggaacgcaagaccacccacctggtgggccgcttgcag
ttcgaggaaggcgactacttcctcaagcccgagaacagccgactatcccacgagatcgac
ctcgatcgcgaccagctgatgggcgctaagcccggacagtatatttccgtcgagatcatc
gactttcccaaccgccgctacaatgccttcggccgtgtgaccgagctgctcggtgatgcc
atgggcccgggtatggaaatcgacgttgccatccgcagccacgatattccacaccagtgg
ccgcaggatgccctgcgcgcggcaaaaaaactgggcgacagcgtacccgaggcggacaaa
cagcatcgcgccgatttgcgcgagctgccgtttgtgaccattgatggtgaggacgccaag
gacttcgacgacgccgtgtactgcgaacaaacaccatccggtggctggcgcctgttcgtc
gcgattgcggatgtgtcccactatgtggcgcccgagagcgcgctcgacctggaagcgcag
aaacgcgcaacttccgtttacttcccgggccgtgtggtcccgatgcttccggaatccctg
tctaacggattgtgctcgctcaacccccatgtcgatcggttggtgatggtgtgtgaaatg
accatcagcaaaaccgggaaaatgaccgactacaccttttctgagggtgtgatccattcc
catgcgcggctgacctacaaccaggtgaatgctttcatcactgcacccgactccggcctg
ggccggcagactgctcgcaagctcaagggaaccgcaccgcacattcacgcgctgcacgat
ctgtattcggtactgaagcaggcgcgcacccaacgcggcgcgctggattttgaaaagtcc
gaagtgcaattcgtgtttaccgaagaccgcaagatcgatcggatcattccggtaatccgc
aacgacgcgcacaagatgattgaggagttcatgctgagcgccaacgtggcgaccgcagac
tttctcaagcgccagaagatgcccgcactgtaccgtgtacacgacggtccacaagacaaa
aagctgaccgccctgcgcgcattcctgaccaccaaggggctcaagctcgccggcggcaat
aagccacgcccggagcactatgaccagctcatgagccagattggtgaacgcagcgatgcg
cagaccattcgcaccatgctgctgaggtccctcagccaggcggagtacagcatggacaac
cgcggccactttggtctcgcctattccgcctatgcacatttcacttcgcccattcgccgc
tatccggatctcatggtgcaccgggcaatccgttcggtgattcgccagtccaagcagcgc
tctacacttggccgggcgctgaagttcatcatcggcaagggcaaagattcggtacaacgc
ttcgacagcgcgcctctcctcgccccgggcaaaagctacccctatggcaaaaccgccatg
cagtctctggccatgcactgctccaacgcctcacgccgcgccgacaaggccagctgggac
gtggaggcctggctgaaatgcgaatatatgcaggatttcgtcggcgatgtattccagggt
gtggtggctagcgttacccacttcggtctgtttatcgagattgacggtattcaggtcgag
ggactgatccatatatcggcactgaaaaacgactactatcactttgatgccgaccggcag
tgcctgatcggcgaacaacgccgcaaaagctttgccatcggcgacacgatcaaagcccgt
gttgtcgctgtggatatggagcgtcgaaaaatagagtttgcgctcgccagctga
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