Microbulbifer sp. YPW1: HUW35_10095
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Entry
HUW35_10095 CDS
T10374
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
micy Microbulbifer sp. YPW1
Brite
KEGG Orthology (KO) [BR:
micy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
micy03009
]
HUW35_10095 (rlmD)
Enzymes [BR:
micy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HUW35_10095 (rlmD)
Ribosome biogenesis [BR:
micy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HUW35_10095 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
RrnaAD
MTS
Methyltr_RsmB-F
TRM5-TYW2_MTfase
PCMT
Methyltransf_11
Methyltransf_23
Cons_hypoth95
Methyltransf_12
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
QKX17320
UniProt:
A0A7H8PYI2
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All DBs
Position
complement(2462197..2463612)
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AA seq
471 aa
AA seq
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MPSRRPPFPTNRSRKAAPPKRSSKPSSTKPSNATPTVTIEALSHEVRGIARLEGKTLFVD
NALPGETVKVRYLANRAKFDEAVATEVLEAAPERQDPPCPHFAQCGGCALQHMQPDAQIA
AKQKILLDQLQRFARISPDQVLPPLTADIAGYRRKARLGVRYVKEAHKKGASGKPQLVLG
FREKRSNNLTDIRECLVMPDSFSSQLPQLRALVDQCREGRHISHIEVAAGEDATALVVRH
LKPLPETDVQLWLDFVQQQQDWHLYLQAEDTPHKIWPEDGEERLSYALPEFDLTMHFHPQ
DFVQVNFAINRQMVHRAVELLDPQPDERVLDLFCGLGNFTLPLAKRAAEVVGVEGALDLT
RRGRENAERNQLDNVQFQAADLTEDFSTSPWARGGFDKILLDPPRTGALEVVRNIAHFGA
KRIVYVSCNPATLARDTAELLQRGYRLSQAGVMDMFPHTTHVESIALFERK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgccctccagacgccctccctttccgacaaacaggtcgcgcaaagccgcgccccccaag
cgcagcagcaaaccgtccagcacaaaaccctcgaacgccacaccgacggtgaccatagag
gcactcagccacgaagtgcgcggtatcgcgcggctggaaggcaaaaccctgtttgtggat
aacgccctgcccggggaaaccgtcaaggtgcgctacctggccaaccgggccaagttcgac
gaagccgtcgcgactgaagtactcgaagctgcgccggagcgacaggacccgccctgcccc
cactttgcccagtgcggtggctgcgcgctacagcacatgcagcccgatgcgcagatcgcc
gccaagcagaaaatcctgctcgaccagctgcaacgctttgcccgcatcagccccgaccag
gtattgccgccactcactgccgacatcgccggctaccgccgcaaggcgcgtctgggggtt
cgctatgtgaaagaagcacacaagaaaggagcgagcggcaaaccacagctggtgctaggg
ttccgcgagaagcgctccaacaacctcaccgatattcgcgaatgcctggtgatgccggac
tccttttccagccagctgccgcaactgcgcgcgctggtcgaccagtgccgggaaggccga
cacatctcccatattgaagtcgccgccggcgaagacgccaccgcgctggtagtccgccac
ctcaaaccattaccggaaaccgatgtgcagctctggctcgacttcgtgcagcagcagcag
gactggcacctgtacctgcaggccgaggacacaccccacaaaatctggcccgaagacggc
gaagaaaggctgagctacgccctgcccgaattcgacctgacgatgcacttccatccccag
gactttgtgcaggtgaacttcgccatcaaccgccagatggtgcaccgcgcggtcgaactg
ctggatccacaaccagacgagcgcgtactcgacctgttctgtggcctgggtaacttcacc
ctgccgctggccaaacgcgccgcggaagtggtgggcgttgaaggcgccctcgacctcacc
cgccgcggccgtgaaaatgccgagcgcaaccagctagacaatgtgcaattccaggccgcc
gacctcaccgaggacttttccacaagcccctgggcaagaggcggtttcgacaaaatcctg
ctggacccaccgcgcaccggcgcactggaagtggtgcgcaacatcgcgcatttcggggcc
aaacgcatcgtctacgtctcctgcaaccccgccaccctggcacgggataccgcggaactt
ctgcaacggggctaccgtctaagtcaggcgggcgtaatggacatgttcccccacactacc
catgtggagtccattgccctgtttgaacgcaagtaa
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