Microbulbifer sp. YPW1: HUW35_16145
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Entry
HUW35_16145 CDS
T10374
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
micy Microbulbifer sp. YPW1
Pathway
micy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUW35_16145 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micy03019
]
HUW35_16145 (rne)
03009 Ribosome biogenesis [BR:
micy03009
]
HUW35_16145 (rne)
Enzymes [BR:
micy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HUW35_16145 (rne)
Messenger RNA biogenesis [BR:
micy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUW35_16145 (rne)
Ribosome biogenesis [BR:
micy03009
]
Prokaryotic type
rRNA processing factors
HUW35_16145 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
QKX18368
UniProt:
A0A7H8Q190
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All DBs
Position
3976471..3979674
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AA seq
1067 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFLKQPKDIDGRIKIKDVVKEGMEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDERSDLRDALSSVEVPSGMGIIVRTAGVGRSGEE
LQWDLNYLLQLWDAIKKEADDSKAPHFLFQESNVIIRAIRDYMRDDIGEVIVDENGAYQL
AAEFARQVMPNYANKVKFYDDNIPLFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETARTINLEAADEIARQLRLRDMGGLVVIDFIDMQSKSSQREVE
KRMEKALGMDRARVQVGRISRFGLLEMSRQRLRPSLGETTFRVCPRCSGQGTIRGTKSLA
LSILRLVEEEAKKERSAEIRAITPVNVATYLLNEKRKAISNIEARNNTRVVVVPNADLET
PHFEVQRLRDDDSTTLETSYKISGTIEEVAEKDKEDEPLRAPAQPAVQQIAHSAPAPTPT
AKPKAKAKEKQEEKPGLFSRLISAISALFSSEEEEKSDKKHKKSSGRGKNYQQRNRNQRG
GRGRGRGNRGNRRDDQRSDERKDDTRSKRGDKQRDDSEGKDRRSENRENAREANRDNARD
GNRDGQREGQRRSRRRRGGDRRNEPQTTAAEVENTNLDNAAEVSGSDDDQQRPARRPSNV
RGRPQPRRRGRRGGDNSGNDSAASEQQETAKSEVSNESETGAKDERPAEPQRKPRAKRED
KPVAKPEQQAEQRSEKPATEPKAETKAAAKPEAKAEQPWAGTQPRTEAPAKAEQDVETPT
TTEEASKPAKTADTSGSEMEAAKKPAAKREVEVEAEAPAEAKAPEAAPATAQSPAEPEAS
AEANVTKAPEAKAEREDTAEVPETHAAGDLLAESPEDTAASVSVKAEVEQPEETAKVADT
SVEASNEEAPEAQVETAEPEAPSAEAAPATRAPGRASNDPRINPKPLVDFKVVTARPEVG
EMRPLDTAQPANIEHSPRPLQRPANDPRVKRSAGASAESSSDSAEAS
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctgatcaacgcaacccagccggaagagctgcgcgttgcactggtcgac
ggccaatggctgtacgacctggatatcgaaaatcgcacccgcgaacagaaaaaagccaat
atctacaagggcaaaatcacccgcgtagaaccctccctcgaagccgcctttgtcgattac
ggtgctgagcgccacggcttcctgcccctgaaagaaatttcacgcgaatacttcctcaaa
cagcccaaagacatcgatggtcgcatcaaaatcaaggatgtcgtcaaagagggcatggaa
gttatcgttcaggtcgataaagaagagcgtggcaacaagggtgccgccctgaccaccttt
atcagccttgcaggccgctacctggtactgatgccgaacaacccgcgtgcaggcggtatc
tcccgtcgcatcgagggtgatgagcgcagcgacctccgcgacgcgctgtccagcgtcgaa
gtcccttccggcatgggcatcattgtgcgcaccgccggtgttggccgcagcggtgaagaa
ctgcagtgggacctcaactacctgctgcaactctgggacgccatcaaaaaggaagcggac
gactccaaagcgccccatttcctgttccaggaaagcaacgtgattattcgcgcaattcgc
gactatatgcgtgacgacatcggtgaagtcattgtcgacgagaatggcgcttaccagctc
gcggcagagtttgcccgccaggtcatgccgaactacgccaacaaggtgaagttctacgac
gacaatatcccgctgttcaatcgctaccagattgagagccagatcgagaccgcattcgag
cgcgaagtaaagctgccctccggtggctccatcgttatcgacgtaaccgaagccctggtc
tccatcgacatcaactcctcccgcgctaccaagggcggcgatatcgaggagactgcgcgt
accattaacctggaagctgcagatgagatcgcccgtcagctgcgcctgcgcgacatgggt
ggcctggtggttatcgacttcatcgacatgcagagcaaatcctcccagcgcgaagttgaa
aagcgcatggagaaagccttgggtatggaccgcgcccgtgtacaggtaggccggatctcc
cgctttggcctgctggaaatgtcccgccagcgcctgcgcccatccctgggtgaaacgact
ttccgcgtgtgtccccgctgtagcggccagggcaccatccgcggcaccaagtctctggcc
ctttccatcctgcgcctggtggaagaagaagcgaagaaagaacgcagtgcagaaatccgc
gccatcacaccagtgaacgtggcgacctacctgctcaacgaaaagcgcaaggccatttcc
aatatcgaagcgcgcaacaacacccgcgtggtggttgtgcccaacgccgatctggaaacc
ccgcacttcgaagttcagcgcctgcgcgacgacgactcaactaccctggaaacctcctac
aaaatctccggcaccattgaagaggtagcggagaaagacaaggaagacgaaccgctgcgc
gcaccggcacaaccggctgtccagcagatcgctcattccgcgcccgcccccactccgaca
gccaagcccaaggctaaggccaaggagaagcaggaagagaagcccgggctgttcagccgc
ctgatcagtgctatctccgccctgtttagcagtgaggaagaggagaaatccgacaagaag
cacaagaagtccagcggtcgcggcaagaactaccagcagcgaaatcgcaaccagcgcggc
ggccgtggacgcggtcgcggaaatcgcggcaatcgccgcgacgaccagcgcagcgatgaa
cgcaaggacgacacccgctccaagcgcggcgacaagcagcgcgacgacagcgaaggcaaa
gatcgtcgtagcgaaaatcgcgaaaacgcccgcgaagcgaaccgcgacaacgcacgtgac
ggaaatcgcgatggacagcgcgaaggccagcgccgcagccgcagacgtcgcggtggtgac
cgccgcaacgagccccagaccactgctgcagaagtcgaaaacactaatctcgacaacgca
gcggaagtatccggttccgacgacgaccaacagcgccccgcacgccgcccaagcaacgtg
cgcggacgcccacaaccccgtcgtcgcggtcgccgcggtggagacaacagcggcaacgac
tctgcagcaagcgaacagcaagaaaccgccaagtctgaggtgagcaacgagagtgagaca
ggcgcgaaagatgagcgccctgcggagccccaacgcaagccgcgcgccaagcgtgaagac
aagccggtagcgaagcctgagcagcaagcagaacagcgcagcgagaaacctgcgaccgag
ccgaaggctgaaaccaaggctgcagcgaaacccgaagcgaaagcagagcagccctgggcc
ggcacacagccgcgtaccgaggcgcccgccaaggccgagcaagacgtagaaactccgacc
accactgaagaagccagcaagccggccaaaaccgcagacacctctggcagcgagatggaa
gcggccaagaaaccggctgcgaagcgcgaagtagaagtggaagccgaagcaccggcagag
gcgaaagcgccagaggcggccccagcgacagcacaatctccggcggaacccgaagcaagt
gctgaagccaatgtcaccaaggcaccggaagcgaaagctgagcgcgaagacactgcggaa
gtacccgagacccacgcagcaggcgacctactggcagaatcgccagaagacaccgctgcc
agcgttagtgtcaaagcagaagtggaacagcccgaagaaactgccaaggttgcagacacc
agcgtagaagcctccaacgaagaagcgccagaagctcaggtggaaaccgccgagccggaa
gcgcccagcgcagaggccgctccggccactcgcgcacctggtcgcgctagcaacgacccg
cgaatcaacccgaagcctctggttgatttcaaagttgtcactgcccgcccggaagttggt
gaaatgcgcccgctcgataccgcccaaccggccaacatcgagcacagccctcgcccactc
cagcgccccgccaatgatccccgggtcaagcgcagcgcaggcgcgagtgccgaaagcagc
tctgactctgccgaggcaagttaa
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integrated database retrieval system
