Microbulbifer sp. YPW1: HUW35_17735
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Entry
HUW35_17735 CDS
T10374
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
micy Microbulbifer sp. YPW1
Brite
KEGG Orthology (KO) [BR:
micy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
micy03016
]
HUW35_17735
Enzymes [BR:
micy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HUW35_17735
Transfer RNA biogenesis [BR:
micy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HUW35_17735
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Rrp44_S1
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
QKX18662
LinkDB
All DBs
Position
4360144..4362093
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AA seq
649 aa
AA seq
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MLNADALKQLSQLKTDIRSTKEFAEGRVRGSSGKFGFVVLDDGREAFLPPAEMDRVFPGD
RVRVSLTEEDNGKLSAELDQLVESSLKYLVGQYVQRGQGHFIQPSEHGLSRWIFLPPKAR
GKAQPGEFIACSLTRHPFKDGKSQAKVETVIGKPDNAGIEHAFVVAQYRLPNQFGKEALQ
QAESIPARLEALCAERNDLSALGFVTIDAETTKDMDDALAVTESDDGWTLHIAVADPSSL
IEAGSALDKEARKRANSVYLAGETLPMLPANLCENSFSLIAGELRPVLVMRIEVGKDGAL
KGFDYEFAAIRSQHKLSYAQVAQFIEGDASAVPAEQHDSLRRLDVLSKARAAYRAGHSLV
MEDRPDYDLILNDQRKIERIEKQQRTAAQRMVEEAMLAANISAGEKLAELGAGCFSIHLG
FRDERMAEIRALLKETLPEYAEQDLHQLDVYLKLVKELESHSDTEMHNVLAVLKRMLRPG
ELSNSAAAHLGLGLAHYATVTSPIRKFNDLHNHRVLRAAQQGETQPALDDEQSEALQQSV
GTGRQADRALQQWLFCQFLEGKTGEEFTGTITLVNGAGIGVRLDEFGINGFVRFNSKKNP
FEFDGKRLRITRGEETFQLDQQVQVKVAAVDTEKRRIAFELASESTSAE
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacgccgacgccctgaaacagctgtcccagctgaagaccgacatccgttccacc
aaggaatttgccgaggggcgcgtacgcggcagcagtggcaagttcgggtttgtggtgctg
gacgacgggcgcgaggcattcctgccgccggcggagatggaccgggtatttcccggggat
cgggtaagggtcagcctgaccgaagaggacaatggcaagctttccgctgaacttgatcag
ctggtcgagtccagcctcaaatatctggtgggccagtacgtccagcgcggccagggccac
ttcatccagcccagcgaacacggcctgtcgcgctggattttcctgcccccaaaggcccgc
ggcaaagcacagccgggtgaattcatcgcctgctcactcacccgtcacccgttcaaggac
ggaaagtcccaggcgaaagtggaaaccgtaatcggcaagccggataacgccggtatcgag
cacgcctttgtggtcgcccagtatcgactgcccaaccagtttggaaaggaagcactgcaa
caggcggaatccatcccggcacggctggaagcactctgcgccgagcgcaacgacctgtca
gcactgggttttgtcaccatcgatgcggaaaccaccaaagatatggatgacgcccttgcc
gtcaccgaatccgacgacggctggaccctgcacatcgcggtggccgacccctccagcctg
atcgaggcaggctctgcgctggataaagaagcccgcaagcgcgccaacagcgtctatctg
gcaggcgaaaccctgcccatgctgcccgcaaacctgtgtgaaaacagtttctccctgatt
gccggtgaactgcgcccggtattggtgatgcgtattgaagtgggtaaagatggcgccctg
aaaggcttcgattacgagtttgccgccatacgctcgcagcacaaactgagctatgcccag
gtagcgcaatttatcgagggcgatgcgtctgcagtacccgctgagcaacacgacagcctc
cgtcgtctggacgtcctgagcaaagcccgcgcagcgtatcgcgccggccactcgctggta
atggaagaccgcccggattacgacctcatcctcaacgatcagcgcaagatcgagcgcatt
gaaaagcagcagcgcactgcagcccagcgcatggtggaagaagccatgctggctgcaaat
atctctgccggtgaaaagctcgccgagctgggggctggctgcttctctatccacctgggt
ttccgcgacgaacgcatggcagaaatccgcgcactgctgaaagaaacactgccggagtat
gccgagcaggacctgcatcagctggacgtctatctgaagctggtgaaagagctggaatcc
cacagcgataccgaaatgcacaacgttctcgccgtactgaagcgcatgctgcgcccgggt
gaactgagcaatagtgccgccgctcatttggggctgggtctggcacactatgcgaccgtc
acctcaccgatccgcaaattcaacgacctgcacaaccaccgggtgttgcgcgccgcccag
cagggagaaacccagccggccctggacgatgagcaaagcgaagccttacagcaaagcgtc
ggcacaggccgccaggcagatcgcgccctgcaacaatggctgttctgccagttcctggaa
ggcaaaaccggcgaagagttcaccggcaccatcaccctggtcaacggtgcgggtatcggt
gtgcgcctcgatgaattcggcatcaacgggtttgtccgcttcaacagcaaaaagaatccg
ttcgaattcgacggcaagcgcctgcgtatcacccgcggcgaagaaaccttccaactggat
caacaggttcaggtgaaagtggccgcggtcgacacagaaaaacgccgcattgcttttgaa
ctggccagtgaaagcaccagtgcagagtaa
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