Microbulbifer sp. GL-2: GL2_04540
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Entry
GL2_04540 CDS
T07982
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
micz
Microbulbifer sp. GL-2
Pathway
micz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GL2_04540 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micz03019
]
GL2_04540 (deaD)
03009 Ribosome biogenesis [BR:
micz03009
]
GL2_04540 (deaD)
Enzymes [BR:
micz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GL2_04540 (deaD)
Messenger RNA biogenesis [BR:
micz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GL2_04540 (deaD)
Ribosome biogenesis [BR:
micz03009
]
Prokaryotic type
rRNA helicases
GL2_04540 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_22
AAA_30
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBM00380
UniProt:
A0A510ING8
LinkDB
All DBs
Position
complement(502696..504471)
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AA seq
591 aa
AA seq
DB search
MNSEMTDTPKPAGFDQLGLPSEILNAIEKLGYETPSPIQAQTIPSLMEGRDVLGQAQTGT
GKTAAFALPLLSQLDLKDRRPQALVLAPTRELAIQVAEACQSYASKLKGFHVAPIYGGAD
YRGQMQQLKRGVQLVVGTPGRVMDHMRRGSLDLSNLRTLVLDEADEMLRMGFIDDVQWVL
EQIPEERQIALFSATMPKEIARIAREHLQEPVEVKIRVKTETAETIRQRYWPVGGLHKLD
ALTRILEAEPVDATIIFVRTKNSTVELADKLAARGFASAALNGDMAQNLREGVIDKLKKG
KLDIVVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRER
RMLRVIEKATKKPIEKLELPSADAVNSARMQRFRERITATLEGQTDLAPYRQLVEEFLAQ
NDVDPLDVAAALASMAQGDQPLLIKEQEPRQRRERPERDADFEGRGRKKGGYEKDRKMPP
PDEGLERYRIEIGREQGVRPGSIVGAIANEVELDSSYIGRIEIYPDFTTVDLPSGMPKEV
FQHLKKVRVAGKPMKISRFDEAGAKPKAKPKGKPKGKPKSKPKFKRENSGE
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
gtgaattccgaaatgaccgataccccaaaaccggccggcttcgaccagctgggcttgccg
tctgaaatcctcaatgccatcgaaaagcttggttatgagaccccatccccaattcaggcg
caaactatcccttctttgatggagggccgcgatgtactgggccaggcgcagaccggcacc
ggtaaaactgctgccttcgccttgccactattgtcccaactggaccttaaagaccgccgc
cctcaggctctcgtactggcaccgactcgagaattggcaatccaggtggctgaggcgtgc
cagtcttatgcttccaagctgaaaggcttccacgtcgcccccatctacggtggtgcagat
tatcgtggccagatgcagcagttgaagcgcggagtgcagctggtggtgggaaccccgggc
cgggtgatggaccatatgcgtcgtggctccctggacctatccaacctgcgtactctggtg
ctggatgaagccgatgagatgctgcgtatgggctttattgatgacgtgcagtgggtgctg
gaacagattcctgaagagcgtcagatcgctctcttttctgccactatgcccaaagagatt
gcccgaattgcccgcgagcacctgcaggaaccggttgaagtcaaaatacgtgttaaaact
gagactgccgagactattcgccagcgctactggccggtaggcggcctgcacaagctggac
gcactgacccgtatcctcgaagcagagccggtggatgccacaatcattttcgttcgcacc
aagaacagcactgtggagcttgcggacaagctggcggcgcggggcttcgctagtgccgct
ctgaatggcgatatggcgcagaacctgcgtgaaggggtgatcgacaagctcaagaaaggc
aagctcgatatcgttgtagccaccgatgtggcggcgcgtggcctggatgtaaaacgcatc
agccatgtaatcaactatgacatcccctacgatacggaagcttatattcaccgtatcggc
cggacaggccgcgccggtcgcgaaggtgatgccatcctgtttgtggctccgcgtgagcgc
cgcatgttacgggttatcgaaaaagcgaccaagaagcctatcgagaagctggaattgccc
agcgccgacgcagtcaacagcgcccgcatgcagcgtttccgcgagcgtattactgcgacc
ctggaaggccagaccgacttggctccctaccgtcagctggtagaagagttcctggcgcaa
aacgatgtggacccgttggatgtcgccgcagcactggcttcgatggcccagggtgaccag
ccactgctgatcaaagagcaggagcccaggcagcgccgtgagagacctgagcgcgatgca
gacttcgaagggcgtggacgcaagaaaggcggttatgagaaagaccgcaagatgccccca
ccggatgaaggcctggagcgttaccgtatcgaaatcggtcgcgagcaaggcgtaagaccg
ggcagtattgttggtgcaatcgccaatgaagtagagctggatagctcctacattggccgg
attgagatctacccggatttcaccacagtagatcttccctctggaatgcccaaggaagtc
ttccagcacttgaagaaagtgcgtgtggctggaaagccgatgaagatttcccgttttgac
gaggccggtgcaaagcctaaggctaagccaaaaggcaagcccaagggtaagccgaagagc
aagcccaagttcaagcgggaaaatagcggggagtaa
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