Microbulbifer sp. GL-2: GL2_08720
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Entry
GL2_08720 CDS
T07982
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
micz
Microbulbifer sp. GL-2
Pathway
micz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
micz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GL2_08720 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
micz03021
]
GL2_08720 (rpoB)
03400 DNA repair and recombination proteins [BR:
micz03400
]
GL2_08720 (rpoB)
Enzymes [BR:
micz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GL2_08720 (rpoB)
Transcription machinery [BR:
micz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GL2_08720 (rpoB)
DNA repair and recombination proteins [BR:
micz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GL2_08720 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BBM00798
LinkDB
All DBs
Position
complement(969496..973569)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPKVMDVPFLLAIQLDSYRNFTQADKRPDDRVDVGLQAAFKSV
FPIVSYSGNAALEYVSYTLGKPAFDVKECTLRGVTYACPLRVRVRLIIYDKESANKSIKD
IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYAARV
IPYRGSWLDFEFDPKDLVFVRIDRRRKLPATILLRALGFSSQEMLEMFFESSKFELHDDH
VSLELIPSRLRGDVASFDIKDGQGKVIVEEGRRITPRHIRQLEKAGVEKLEAPLEYLFSR
VLANDIIDESTGEIAVECNTEITAEVIAQLRELNIKSFETLYTNDLDRGPFISDTLRADP
SRTQLEALVEIYRMMRPGEPPTKESAESLFENLFFTDERYDLSAVGRMKFNRRLGREDET
GAGTLSKEDIVDVLKTLIFIRNGQGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARANHYGFLESAYRKVV
DGKVTDEIEYLSAINEANYVIAQASAAVDDEGSFTDDLVSVRHHNEFALKAPAEIQYMDV
SAKQVVSVAAAMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVARDSGVC
VVAKRGGVIERVDSSRVVVRVADAEVEAGDAGVDIYNLTKYIRSNQNTCINQRPIVSTGD
RVSRGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCIARDTKLGSEEITADIPNVGESALNKLDESGIVYIGAEVGAGDILVGKVTPKGEAQL
TPEEKLLRAIFGEKASDVKDTSLRAPSGTRGTVIDVQVFTRDGLQKDQRSIDIEKAQLDE
VRKDLNEEYRIVEGATFERLQQALRDQKAAGGKGISKGQELTAELLAALPREDWFKLRME
DESLNEQLEKAEVQLKERRKLLDEAFEDKKKKLESGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVISVIKPVEDMPYDQNGEPVDIVLNPLGVPSRMNVGQVLEMHLGMAAKG
LGVKVDKMIKEQQEIAKVRGFLEEVYNSTGGRKEELDEFSDEEVMTMAQNLRRGVPMATP
VFDGADESEIKHLLRLADIPDSGQITLHDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTKMY
KNIVDSDHRMEPGMPESFNVLVKEIRSLGMNFELEHE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggattttggcaaactgcctaag
gtcatggatgtgcccttcctgcttgcgatacagctggattcatatcgcaattttacgcag
gccgataaacgccccgacgaccgtgtggacgttggcctgcaggcggcgtttaaatctgta
tttccgattgtcagctattccggcaatgccgctctggagtatgtgagttatacgctgggt
aagcccgcctttgacgttaaggaatgtactctgcgtggtgtgacttatgcatgcccgtta
cgcgtgcgagtgcgcctgattatttacgataaagagtctgcgaataagtccatcaaggac
atcaaggagcaggaagtgtacatgggcgagattccgctcatgaccgataacggtactttc
gtgatcaacggtaccgaacgtgtaatcgtatcccagctgcaccgttccccgggtgtattc
ttcgatcacgacaaaggcaagactcactcttccggtaagttgctgtacgctgcgcgcgtc
atcccctaccgtggctcctggctggattttgaattcgacccgaaagacctggtattcgta
cgtatcgatcgccgtcgtaaactgccagccaccatcctgttgcgcgccctgggtttctcc
tctcaggaaatgctggagatgttcttcgaaagcagcaagtttgagctgcatgatgatcac
gtcagcctggagttgattccgtcccgcctgcgtggtgatgttgcctcctttgatatcaag
gatggccagggtaaggtaattgtggaagagggacgccggattaccccgcgtcatatccgt
cagctcgaaaaagccggtgtggaaaagctggaagcaccgcttgagtacctgttcagccgt
gttctcgcgaacgatattatcgatgagtccacaggtgaaatcgccgttgagtgtaatacc
gagatcactgcagaagtgatcgcgcaactgcgtgaactgaatattaaaagtttcgagacg
ctgtacaccaacgacctggatcgcggtccatttatttctgacaccttgcgcgcagaccct
tcccgcacccagttggaagccctggtggaaatctatcgcatgatgcgcccgggcgagccg
cccaccaaggaatccgcagagtccctgttcgagaacctgttctttaccgatgagcgctac
gacctgtccgcagttggccgtatgaagttcaaccgccgcctcggtcgtgaagatgaaact
ggtgctggcaccttgagcaaagaggatatcgtcgacgtattgaagacgttgatttttatc
cgcaatggccagggtatggtggacgatatcgaccacctgggtaaccgtcgtgtgcgttcc
gtgggcgaaatggctgaaaaccagttccgcgtcggtctggtacgtgtagagcgtgcagtt
aaagagcgtctgtctatggcggagtccgaaggcttgatgccgcaggacctgatcaatgcc
aagccggttgccgcagccgtgaaagagtttttcggctcttcgcagctgtcccagtttatg
gatcagaacaacccgctgtcagaagtgacgcacaagcgtcgtgtttccgcgcttggtccg
ggtggtttgactcgtgagcgtgcaggctttgaggtccgcgacgtacacccgacccactac
ggtcgtgtatgtcccattgagacgccggaaggtccgaacattggtctgatcaactccctg
gcgacctatgctcgagccaaccactacggcttcctcgagagtgcctatcgcaaagtggtt
gacggtaaagttaccgacgaaatcgaatacctgtcagcgattaacgaagctaactatgtt
atcgcccaggcatctgctgctgttgatgatgagggtagcttcaccgatgacctggtgagt
gtgcgccatcacaacgaattcgccctgaaggcaccggctgaaatccagtatatggatgtg
tctgccaagcaggtggtttccgtggctgcggcgatgattccgttcctcgagcacgatgat
gccaaccgcgccttgatgggctcgaacatgcaacgccaggcggttccgaccctgcgtgct
gaaaagccgctggtgggtaccggcatggagcgtaccgtagcgcgcgactcgggtgtgtgt
gtggtagccaagcgtggcggtgtgattgagcgtgtcgactccagccgtgtagtggtgcga
gtggcagacgccgaggttgaagccggtgatgcaggtgtggatatctacaacctgaccaag
tacatccgctccaaccagaatacctgtatcaaccagcgcccgattgttagcactggcgat
cgcgtatcccgcggcgacatcctcgccgatggcccatctgtagatctgggtgagcttgcc
ctgggccagaatatgcgcatcgcctttatgccttggaatggttacaactttgaggactcc
atcctcatcagtgagcgcgttgtacaggaagatcgcttcacaaccattcacattcaggag
ctgacctgtattgcccgtgacaccaaactgggcagtgaggaaatcaccgcagatattccc
aatgtgggtgagtctgcgctgaacaaactggacgaatccggcatcgtctatatcggtgcg
gaagtgggcgcgggtgacatccttgtcggtaaggtaactccgaaaggcgaagcccagctg
actccagaggagaaactgctgcgtgcgatctttggtgagaaggcgtccgatgttaaggac
acttccctgcgagcgcccagcggcacccgcggtaccgtgattgacgtgcaggtgttcacc
cgtgatggtctgcagaaagaccagcgctccatcgatatcgagaaggcgcagctggacgaa
gttcgcaaagacctgaatgaagaataccgcattgttgaaggcgcaactttcgagcgtctg
cagcaagcactgcgggaccagaaggccgctggtggtaaaggtatcagcaagggccaggag
ctgaccgctgaattgctggctgcgctgccccgcgaagactggttcaagctgcgtatggaa
gacgaaagtctgaacgagcagctggaaaaagccgaagtccagttgaaagagcgccgcaag
ctgcttgatgaagccttcgaagacaagaagaaaaaactggagtccggtgatgacctggct
ccgggcgtgctgaaaatcgttaaggtttacctggcgatcaagcgccgtatccagccgggt
gacaaaatggccggtcgccacggtaacaagggtgtgatctccgtgatcaagccggttgag
gatatgccttacgaccagaatggtgagccggtggatatcgtcctgaacccgctgggcgtt
ccttcgcggatgaacgtgggtcaggttctggaaatgcacttgggcatggccgctaagggc
ctcggcgtaaaagtcgacaagatgatcaaggaacagcaggaaatcgccaaggtgcgcgga
ttcctggaagaagtctacaactccactggcggacgtaaggaagagctggacgagttctcc
gatgaggaagtcatgaccatggcgcagaacctgcgtcgcggtgtacccatggcgaccccg
gtatttgacggtgccgatgaaagtgagatcaagcacctgctgcgtcttgcggatatccca
gactcgggtcagatcaccctgcacgacggccgtacaggcgatgctttcgagcgtccggtg
actgtgggctacatgtacatgctgaagctgaaccacttggtggacgacaagatgcacgcg
cgttctaccggttcctacagcctagttacccagcagccgctgggtggtaaggcacagttc
ggtggccagcgcttcggggagatggaagtgtgggcactggaagcttacggtgctgcttac
accctgcaggaaatgctcacggttaaatccgatgacgtggaagggcggaccaagatgtac
aagaacatcgtggactccgaccatcgtatggagccgggtatgccggagtccttcaacgta
ctggtcaaggaaatccgctctctcggtatgaacttcgagctcgagcacgagtaa
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