Microbulbifer sp. GL-2: GL2_12360
Help
Entry
GL2_12360 CDS
T07982
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
micz
Microbulbifer sp. GL-2
Brite
KEGG Orthology (KO) [BR:
micz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
micz03016
]
GL2_12360 (rtcB)
Enzymes [BR:
micz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GL2_12360 (rtcB)
Transfer RNA biogenesis [BR:
micz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GL2_12360 (rtcB)
Prokaryotic type
tRNA splicing ligases
GL2_12360 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
BBM01162
LinkDB
All DBs
Position
complement(1399301..1400533)
Genome browser
AA seq
410 aa
AA seq
DB search
MNPLPYEVMQEGGVPIKSWTLGVPFEEEARAQLRNVSQMPFIHKWVAAMPDVHLGKGATI
GSVVPTLGAVIPAAVGVDIGCGMMAVRTSLTAAQLPDNLAGVRNAIERAVPHGRTGGFRG
RKGRDKGAWANVPDDVLGGWTPLAAQFELLKERHPILKNTNNINHLGTLGTGNHFIEMCL
DEHGSVWLMLHSGSRGVGNRIGTYFIEKAKRDMERWHIHLPDSDLAYFPEGTEHFDDYVQ
AVEWAQEFARINREVMMARTINAVQQVLGMDFDARMEAVNCHHNYVSREHHYGKDVLVTR
KGAVRARVDEMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLVSLEEHR
AATADVECRKDEGVIDETPSAYKSIEKVMAAQKDLVEIVYTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaatccattgccctatgaagtgatgcaggaaggcggcgtccccatcaagtcttggacc
ctgggtgtgccatttgaggaggaggcaagggctcagctcagaaatgtttcgcagatgcca
tttatccataaatgggtggcggcaatgcccgatgtacatcttggtaaaggcgccactatt
ggcagtgtggtacctaccctgggtgcggtaatccccgctgcagtgggtgtggatatcggc
tgcggcatgatggcggtgcgtaccagccttacagcagcacagttgccggataacctggca
ggggttcgcaatgccattgaacgcgcagtaccccacggccgtaccggcggtttccgtggc
aggaaagggcgggataagggcgcttgggccaatgtaccagatgatgtactgggcggttgg
acacctctggcagctcagtttgagctactcaaagaaagacatccgatattaaaaaatacc
aacaatatcaatcatttaggaaccctcggcaccggtaaccactttattgagatgtgcctg
gacgagcatggtagcgtatggctgatgttacacagcggttcccgtggtgtggggaatcgt
attggtacctactttatcgagaaggccaagcgggatatggagcgctggcatatccacctg
ccagacagtgacttagcgtattttcctgagggcacggaacactttgatgattatgtgcag
gcggtggaatgggcgcaggagtttgcccgcattaatcgtgaggtaatgatggcgcgcact
attaacgcggtacagcaggtactgggaatggattttgatgcgcgcatggaggcggtcaac
tgccatcacaattacgtctcccgtgagcatcactacggcaaggatgtactggtgacgcgc
aagggggctgtaagagcgcgtgttgatgaaatgggcattattcccgggagtatgggggcc
aaatcttttattgttcgggggctgggtaatgaggaaagcttctgcagttgtagccatggt
gccgggcgggtgatgtctcgaaccaaggcaaagaaactggtctccctggaggaacaccgc
gcggctaccgccgatgttgaatgccgtaaagacgaaggtgtgatcgacgaaaccccatcg
gcctacaaatctattgaaaaggttatggcagcacaaaaagacctggtggaaatcgtttac
accctcaagcaggtagtctgtgtcaaaggatag
DBGET
integrated database retrieval system
