Microbulbifer sp. GL-2: GL2_18480
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Entry
GL2_18480 CDS
T07982
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
micz
Microbulbifer sp. GL-2
Brite
KEGG Orthology (KO) [BR:
micz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
micz03009
]
GL2_18480 (rlmD)
Enzymes [BR:
micz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GL2_18480 (rlmD)
Ribosome biogenesis [BR:
micz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GL2_18480 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltr_RsmB-F
MTS
Cons_hypoth95
TRM5-TYW2_MTfase
RrnaAD
PCMT
Methyltransf_15
Methyltransf_23
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
BBM01774
UniProt:
A0A510IS89
LinkDB
All DBs
Position
2085166..2086530
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AA seq
454 aa
AA seq
DB search
MSKKPRFITSRKPAKKTLPAEVEVSVEKFSHDMRGIARVAGKTVFIDNALPGEKVHFRYN
TRRARFDEGTAVDILQASPQRCVPRCPHVDLCGGCSIQHLQTREQIAEKQKILLDQLFRF
GSITPGDILPPLVAESYGYRRRARIGIRQLKSRKGRELIFGFRKKRSNDLTDINECHVLH
PAIAGRIPQLKKLVADCDGRMHFSQLDVAVGDDVVALVLRHLRPLADSDRERWVAFAKSA
GIHMYIQAADADSAQRLWPREGEAFLSYQLPEFDLTLRFQPADFVQVNFEINRQMVSHAL
QLLDPQSYERVLDLFCGLGNFTLPLARRAGEVVGVEGQGVLTRRGVENAALNNLDNVQFH
AADLNEEIANQAWAKGGFDKILLDPPRSGALQVVRGIARFEAKKIVYISCNPATLARDAG
ELAQFGYRLSQAGVMDMFPHTDHVESMAVFERES
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaaaccgcgttttattacttcgcgtaaaccggcaaaaaaaacactgccagcc
gaggtcgaagtcagcgtagagaaattcagccacgatatgcgcggtatcgcccgtgttgcc
ggtaaaacagtatttattgataacgccctgccgggggaaaaagtgcattttcgctacaac
actcgtcgtgcccgctttgatgagggcactgctgttgatattttgcaggcttcaccacag
cgctgcgtaccacgctgtccccatgtagatctctgtggtggctgctcaatacagcatcta
caaacgcgtgaacaaattgccgaaaagcaaaaaatattattggatcaactcttccgtttt
ggaagtattacgccgggggatatattgccgccactggtcgccgaatcctatggttatcga
cgcagagcacgtatcggaattcgccagttgaaatcccgcaagggcagggagttgattttt
ggatttcgtaaaaaacgcagcaatgatttgactgatatcaatgagtgccatgtgttgcac
ccggcaattgccgggcggataccacaattgaaaaaactggtggctgactgcgatggccga
atgcacttttcacagctggatgtggcggtgggggatgatgtggtggcactggtactgcgt
catttacgaccattggcggatagtgatagagagcgctgggtggcctttgctaaaagtgca
ggtatacacatgtatatacaggctgctgatgccgactccgctcaacgcttgtggccccgg
gaaggggaggcttttctcagctatcaactgcctgaatttgatctgaccctgcgctttcag
ccagcagattttgtccaggttaatttcgaaattaatcgccaaatggtgagtcatgcactg
cagctgctggacccgcaatcctatgagcgggtactggatcttttctgtggcttggggaat
ttcaccctcccgctggcgcgacgtgcgggtgaagtggtcggggttgaaggccagggcgtg
ctcacccgccggggagtggagaatgctgcacttaataatttggataatgtgcaatttcac
gcagcagatctgaatgaagaaatagcaaatcaagcctgggccaagggcggtttcgataaa
atcctgttggaccctccgcgtagtggtgcactgcaggtggtgcgaggtatcgcgcgcttt
gaagcaaagaaaattgtctatatctcctgtaatccggccaccctcgcacgggatgccggg
gagctggcacagttcggctatcgcctgagtcaggctggggtgatggatatgttcccccat
accgatcatgtcgagtccatggcggtttttgaacgggaatcctga
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