Microbulbifer sp. GL-2: GL2_38440
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Entry
GL2_38440 CDS
T07982
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
micz
Microbulbifer sp. GL-2
Pathway
micz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GL2_38440 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micz03019
]
GL2_38440 (rne)
03009 Ribosome biogenesis [BR:
micz03009
]
GL2_38440 (rne)
Enzymes [BR:
micz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GL2_38440 (rne)
Messenger RNA biogenesis [BR:
micz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GL2_38440 (rne)
Ribosome biogenesis [BR:
micz03009
]
Prokaryotic type
rRNA processing factors
GL2_38440 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BBM03770
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All DBs
Position
4377474..4380509
Genome browser
AA seq
1011 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRTRQQKKANIYKGKITRVEPSLEAAFVDY
GEERHGFLPLKEISREYFLKQPRDIEGRIKIKDVVKEGMEVIVQVDKEERGNKGAALTTF
VSLAGRYLVLMPNNPRAGGISRRIEGDERSELRDALSSVEVPSGMGIIVRTAGVGRSGEE
LQWDLNYLLKLWVAIKEEADTSKAPHFLFQESNVIIRAIRDYMRDDIGEVIVDDKGAFEL
AAEFARQVMPHYTNKVKYYEDAIPLFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETARNINLEAADEIARQLRLRDMGGLVVIDFIDMQSKSNQREVE
KRMEKALSMDRARVQVGRISRFGLLEMSRQRLRPSLGETTFRVCPRCSGQGTIRGTKSLA
LSILRLVEEEAKKERSAEIRAITPVNVATYLLNEKRKTISQIESRNNTRVVVVPNADIET
PHFEVQRLRDDDTATLETSYKISGTVEESITKKDEKPQRAPAQPAVQQITHTAPAPTPEK
KPEPSLFSRLMTAIASLFESKEEEPKKHQKSKNRGKDYQRDRDRNRNRNQRGGRGNRSGR
PSRRKDDRREDSKRDDQREEKQQAKQFEERESGAERGEGQRRRRRRRTNDNRRRDDNRNV
VTENESTSESIEQADESTEQRPARRPSNVRGRPQARRRGRRSENPAASSVAQNQEELNRE
VNEAIDEAEGEARKSRETATGGHNEAPQRKSERREQRPAKSANPATQSKPAVVAPTRTPM
AAKTESTAEPSAETKQAEPYAAFTAKVEKAAEETPAPAQAKEQTAPITAKKPPAKTEAKE
PAAPTVRETKAESAPKTPVSEKPAVPAAQVVESTVAAEATKTVPEDAEEIALTEASAAAE
ALEQRSESVNAAAQVEVVVEEAEASELAASPATQGRASNDPRNNPKPLLELSIVTEHRQV
GSQQPLDTAQPAAISHSPRSLSRPANDPRMARQTTQENTDANNDRDSAEAG
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcaacccagcctgaggagttgcgtgtagccctggtagac
ggccagtggctatatgatctggatattgaaaatcgcacacgtcaacaaaaaaaagccaac
atctacaaaggtaagatcacccgcgtagaaccctctctcgaagccgcattcgttgactat
ggcgaagagcgccacggcttcctccccctgaaagaaatttctcgtgagtacttcctcaaa
cagcccagagacattgaaggacgcatcaaaatcaaagatgtcgtcaaagagggtatggaa
gttattgtgcaagtggacaaggaagagcgcggcaacaaaggcgcagccctgactactttc
gtcagcctcgctgggcgctacctggtactgatgccaaataaccctcgcgcaggcggcatc
tctcgccgtattgaaggtgatgagcgttcagagctgcgggatgcactgtccagcgtcgaa
gttccctccggcatgggcataattgtgcgcaccgccggcgtcggccgcagcggcgaagaa
ctgcagtgggacctcaactacctgctgaagctgtgggtcgccataaaggaagaggccgac
acctccaaggcaccgcacttcctcttccaggaaagtaacgtcattatccgcgctatccgc
gattacatgcgcgatgacattggcgaagtgatagtcgatgacaaaggcgccttcgagctg
gctgcggaatttgcccgccaggtaatgccgcactacaccaacaaggtcaagtattacgaa
gatgccattccgctcttcaatcgctaccagatcgaaagccagatcgaaaccgcttttgaa
cgcgaggtgaaactaccttctggcggctcaatcgtgattgatgtcacagaggcactggta
tccattgatatcaactcctcccgcgcgaccaagggcggcgatatcgaagaaactgcacgc
aatatcaacctggaagcggccgacgaaatcgctcgccagctacgcctgcgcgatatgggc
ggcctggttgtaatcgactttattgacatgcagagcaaatccaaccagcgcgaagttgaa
aagcgcatggagaaagctctcagcatggaccgcgcccgcgttcaggttggccgtatctcc
cgcttcggccttttggaaatgtcacgccagcgcctgcgcccatctcttggcgaaaccacc
ttccgtgtatgcccgcgctgtagcggccaaggcactattcgcggcaccaaatccctggct
ttatccattcttcgcctggtggaagaggaagccaagaaagaacgcagcgcagagatccgc
gccatcactccagtgaatgtcgctacttacctactcaacgaaaagcgtaagacgatctcc
cagattgaatcccgcaacaatacccgtgttgttgttgtacccaatgcagatatcgaaacc
ccgcacttcgaagtacagcgcctgcgtgatgacgataccgccaccctggaaacctcttac
aagatttccggaacagtggaagaatccatcaccaagaaggatgaaaaaccccagcgcgcc
ccggcccaacctgccgttcagcagattacccacaccgcgccggcccccaccccggaaaag
aaaccggaacccagtcttttcagccggctgatgactgcgattgcctccctctttgagagc
aaagaggaagagcccaagaagcaccagaagtcaaaaaatcgagggaaggactaccagcgc
gatcgtgatcgcaatcgcaaccgcaatcaacgcggtggtcgcggtaaccgcagtgggcgc
ccctctcgccgcaaggacgatcgtcgcgaggactccaaacgtgatgatcagcgagaagaa
aaacaacaggccaagcaattcgaagaacgcgaatctggagctgagcgcggcgaaggccag
cgccgtcgccgtcgacgtcgcaccaacgacaaccgccgcagagacgacaatcgaaatgta
gtgactgagaacgaaagcaccagcgaatccatcgagcaagctgacgaaagcaccgagcaa
cgcccagcgcgccgcccgagcaatgttcgtggtcgcccgcaagctcgccgtcgcggccgt
cgttcagaaaatcccgctgcgtcctccgtcgctcaaaatcaggaagagctgaaccgtgaa
gtgaacgaagctatcgatgaagcggaaggtgaagccagaaaatctcgcgaaaccgctacc
gggggccacaatgaagcgccccagcgcaaaagcgagcgaagagagcaaagacctgcaaag
tccgccaacccggcgacgcaatccaaaccggctgtagtagctcccacgcgcacaccaatg
gctgcaaagactgagtccacagcagagccatctgctgagacaaaacaggctgagccctat
gctgcatttactgcaaaagtagaaaaagcagcggaggagactccagcaccagcacaggcc
aaagagcaaactgcacctataacagcaaaaaaacctccggctaaaactgaagcaaaagag
cctgccgctcctaccgttagagaaacgaaagcagaaagcgctcctaaaactccagttagc
gaaaagccagccgttccagcggcgcaggttgtggaatccacggtcgcagcagaagctaca
aagactgtgccggaggacgccgaggaaattgccttgaccgaagccagtgcagctgcagaa
gctttggagcagcgcagtgaatcagtcaatgctgctgcccaggtggaggttgtagtcgag
gaagctgaggcctccgaactggccgcctcccctgcaacccagggacgcgccagtaacgac
ccgcgcaacaaccccaaaccattactcgaactgtccatcgtgaccgagcaccgccaggta
ggctcccagcaaccgctggataccgcccaaccagcagcaatctcgcacagccctcgttca
ctgtctcgccccgccaacgacccccgtatggcgcgccagacaacccaggaaaacactgac
gcgaataacgaccgcgactcagcagaagccggctaa
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