Mycobacterium intracellulare subsp. intracellulare: MIP_02062
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Entry
MIP_02062 CDS
T02325
Name
(GenBank) Cold-shock DEAD box protein A -like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mid
Mycobacterium intracellulare subsp. intracellulare
Pathway
mid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIP_02062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mid03019
]
MIP_02062
03009 Ribosome biogenesis [BR:
mid03009
]
MIP_02062
Enzymes [BR:
mid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MIP_02062
Messenger RNA biogenesis [BR:
mid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MIP_02062
Ribosome biogenesis [BR:
mid03009
]
Prokaryotic type
rRNA helicases
MIP_02062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
UvrA_inter
HEM4
CMS1
Motif
Other DBs
NCBI-ProteinID:
AFS13416
UniProt:
J9WDR3
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All DBs
Position
1472832..1474535
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AA seq
567 aa
AA seq
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MTLSDSSTGAASTTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDVTSTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS
SYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI
LSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKD
GSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE
RHLLKAIEKATRQTLTETALPTVEDVNAQRVAKFADSITTALGAPGIDLFRKLVQDYERE
HDTPMADIAAALALQSRDGEEFLMSPEPPPERRERRTERRDRPEKPRSTRPFATYRIAVG
KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTFKRLEQTRISGVL
INLQPDRSSAKARGGRDGGKPRRKHGE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaccctctcagacagctcgaccggggctgcctctacgacgtttgccgacctgcagatc
cacccctcggtgctgcgggcggttgccgacgtcggctacgaatcacccaccggtatccag
gccgcgacgatcccggcgctgatggcgggctccgacgtggtcgggctggcgcagaccggc
accggcaagaccgccgcgttcgcgatcccgatcctgtccaaaatcgacgtcaccagcacc
gccacccaagccctggtgctcgccccgacccgggagctggccctgcaggtcgccgaggcg
ttcagccggtacggagcccacctgcccaagatcaacgtgctgccgatctacggcggctcg
tcctacagcgtgcagctggccgggctgcggcgcggggcgcacgtggtggtcggcacgccc
ggccgggtgatcgaccacctcgaacgggggacgctggacctgtcccacgtcgactacctg
gtgctcgacgaggccgacgagatgctcaccatgggcttcgccgaagaggtcgatcgcatc
ctgtcggagaccccggaatacaagcaggtggcactgttctccgcgaccatgccgcccgcg
atccgcaagctcaccaccaagtacctgcacgacccgctcgaggtcagcaccaaggcgaaa
accgcgaccgccgagaacatctcgcagcgctacatccaggtcgccggtccccgcaagatg
gacgcgctgacccgggtcctcgaggtcgagccgttcgaggcgatgatcgtcttcgtcaga
accaaacaggccaccgaggaagtcgccgaaaagctaagggcgcgaggtttctccgccgcg
gccatcaacggggacatcccgcagggccagcgcgagcggaccgtcgccgccttaaaggac
ggcagcatcgacatcctggtcgccaccgacgtggccgcgcgcggactcgacgtggagcgg
atctcgcacgtgctcaactacgacatcccgcatgacaccgagtcgtacgtgcaccggatc
gggcgcaccggcagggccggacgttcgggcaccgcgctgctgttcgtttcgccgcgagag
cgccacctgctcaaggcgatcgaaaaggccacgcggcaaacgctcaccgaaaccgccttg
cccaccgtcgaggacgtcaacgcgcaacgggtggccaagttcgccgattcgatcaccacc
gcgctcggggcccccggcatcgacctgttccgcaagctggtccaggactacgaacgcgag
cacgacaccccgatggccgatatcgccgccgcgctggccctgcaatcccgcgacggcgag
gaattcctgatgtcgcccgaacctccgcccgagcgtcgcgagcggcgcaccgagcgccgc
gaccgccccgaaaagccaaggtctacacggccgttcgccacgtatcgcatcgcggtgggc
aagcgccacaagatcggtccgggcgccatcgtgggcgccatcgccaacgagggagggctg
catcgcagcgacttcggccacatcgcgatcggcccggacttctcgttggtggaactgccg
gccaagttgcccaagtcgacgttcaaaaggcttgagcagacccgcatctcgggggtgttg
atcaaccttcagccggacaggtcctcagccaaggcccgcggcggccgggacggcgggaaa
ccgcgcaggaaacacggcgaatga
DBGET
integrated database retrieval system
