Mycobacterium intracellulare subsp. intracellulare: MIP_03558
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Entry
MIP_03558 CDS
T02325
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mid
Mycobacterium intracellulare subsp. intracellulare
Brite
KEGG Orthology (KO) [BR:
mid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mid03019
]
MIP_03558
Enzymes [BR:
mid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MIP_03558
Messenger RNA biogenesis [BR:
mid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MIP_03558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
NACHT
nSTAND3
ABC_tran
DUF3734
PhoH
T2SSE
HBM
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AFS14442
UniProt:
J9WJ22
LinkDB
All DBs
Position
complement(2627577..2631494)
Genome browser
AA seq
1305 aa
AA seq
DB search
MAEPSAAQLRNQLDGLTLRDAARIGRRLKNLRAATPEKLRRLADEIAAARPLVAARQAAV
PTITYPDLPVSARRQEIADAIRGNQVVVIAGETGSGKTTQLPKICLEAGSGIRGTIGHTQ
PRRLAARTVAQRIADELASPLGEAVGYSVRFTDRVSDRTLIKLMTDGILLAEIQRDRRLL
RYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLRVIVTSATIEPQRFAAHFDNAPIIEV
SGRTYPVEVRYRPLEVVVPSASTDDPDDPDDEIVRTETRDEIEAIVDAIRELEAEPPGDV
LVFLSGEREIRDTAEALTFLTNGPGHTEVLPLYARLPTAEQQKVFAPHTGRRVVLATNVA
ETSLTVPGIRYVIDPGNARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRL
YSEQDFAARPRYTEPEILRTNLAAVLLQMAALQIGDIEKFPFLDPPDRRSVRDGVQLLVE
LGAFDGQGAITELGRRLARLPVDPRLGRMILQAETEGCVREMLVLAAALSIPDPRERPSD
REEAAREKHARFADEHSDFMSYLNLWHYLRGQRKSLSGSAFRRMCRSEFLHYLRIREWQD
LVGQLGSIAGDLGIVEDTAGEPADPARVHAALVAGLLSHVGMRREDTREYLGARNANFVL
APGSVLTKRPPRWVVVAELVETSRLYGRTAARIQPEVVERVAGDLVQRTYSEPHWDAKRG
EVMAYERVTLYGLPLVAGRRVGYARIEPVVARELFIRHALVEGEWQTRHHFFRDNARLRA
ELEELEERARRRDLLVGDDDVYALYDARVPTEVVSARHFDAWWKRQRHKTPDLLTFTRAD
LLRTDDNAGTDRPTTWRTGDAALPLTYRFEPGAADDGVTVHVPIDVLARLGGDEFAWQVP
ALREELVTALIRSLPKDLRRNFVPAPDTARAVLAAIEPAAEPLLSSLQRELRRRTGVLVP
VEAFDLDKLPPHLRVTFAVESPDGAEVARGKDLQELQERLTTPARRAVAHAVAGELERTG
LRDWPDDLDELPRVIERAVQGRTVRGFPAFVDTGGAVDLRVLATPDEQHRAIGPGLRRLI
RLSVASPVKAIARQLDPRTRLTLGTNPDGDLSALLEDCADAAADALMPTPVWTRGEFVAL
QERLGKTLAPTAAEIARAVERVLAAAHDVRLLLPTNPPPAHSEAIADVRAQLDRLLPPGF
VTATGRAHLADLTRYLLAIRRRLDGLARGAQADRERMDRVHAVQDAYDELLRELPRTART
DPDVLDIARQIEELRVSLWAQQLGTPRPVSEQRIYRAMDAVRDRR
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaaccgtctgcagcgcagttgcgcaaccaactcgacggcctgacgttgcgcgac
gccgcccgcatcggcaggcgcctgaagaacctccgcgccgccacgcccgagaagctgcgg
cggctcgccgacgagatcgcggcggcgcggccgctcgtcgcggcccgccaggccgccgtc
ccaacgatcacctaccccgacctgccggtcagcgcacggcggcaggaaatcgccgacgcg
atccgcgggaatcaggtggtggtgatcgccggggagaccgggtcggggaaaaccacgcag
ctgcccaagatctgcctggaggcgggtagcggtatccgcggaaccatcgggcatacccag
ccccgccggctggccgcgcgcaccgtcgcccagcgcatcgccgacgaactggcaagcccg
ctgggcgaggccgtcggctacagcgtgcggttcaccgaccgggtcagcgaccgcaccctg
atcaagctgatgaccgacggaatcctgctcgccgagatccagcgcgaccgccgcctgctg
cgctacgacaccctgatcctcgacgaggcacacgagcgcagcctcaacatcgattttctg
ctcggctatctgcgcgagttgttgccgcgccgacccgatttgagggtgatcgtcacctcg
gcgaccatcgagccgcagcgcttcgccgcgcatttcgacaatgcgccgatcatcgaggtg
tccgggcggacctatccggtcgaggtgcgttaccggccgctggaggtcgtcgtgccttcc
gcatccacggacgatcccgacgatccggacgacgagatcgtccgcaccgagactcgcgac
gagatcgaggcgatcgtcgacgccatccgtgaactcgaagccgagccgcccggcgacgtc
ctcgtctttctctcgggtgagcgtgagatccgtgacaccgcagaggctttgacgtttttg
acgaacggcccgggccacaccgaagtgcttccgctgtatgcccggctgcccaccgccgag
caacaaaaggtgttcgcgccgcataccgggcgtcgcgtcgtgctggcgaccaacgtcgcc
gagacgtcgttgaccgtgccgggaatccgctacgtcatcgaccctggcaacgcccggatt
tcgcgttacagccgccgcctgaaggtgcagcggctgccgatcgagcccatctcgcaggcc
tccgccgcccaacgggccggccggtgcggccgggtcgcgcccggcgtgtgcatccggttg
tactccgagcaggacttcgcggcccggccgcgctacaccgagcccgagatcctgcggacg
aacctcgccgccgtactgctgcagatggcggcgctgcaaatcggcgatatcgaaaagttc
ccgttcctcgatccgccggaccggcgcagcgtccgcgacggcgtccagctgctggtcgag
ctcggcgcgttcgacggccagggcgcgatcaccgaactcggccgccgccttgcccggctg
ccggtcgacccacggctgggccggatgatcctgcaggccgagaccgaaggatgcgtgcgg
gagatgctggttttggccgcggcgctgagcatcccggacccgcgggaacggccgagcgat
cgcgaggaagccgcccgcgaaaagcacgcccgcttcgccgacgaacactccgacttcatg
tcgtacctcaacttgtggcactatctccgcggacaacggaagtcgttatccggcagcgcg
tttcgacggatgtgccgatccgaattcctgcactatttgcgcatccgcgagtggcaggac
ctggtcggccagctaggcagcatcgccggcgacctgggcatcgtcgaagacaccgccggc
gagcccgccgatccggcccgcgtgcacgcggcgctggtcgccgggttgctgtcgcatgtg
ggcatgcgccgcgaggacacgcgcgagtacctgggagcgcgtaacgcgaacttcgtgctg
gcgcccggctcggtgctcaccaaacggccgccgcgctgggtcgtcgtggcggagttggtc
gagaccagccggctgtatgggcgcacggccgcgcgcatccagccggaggtggtcgagcgg
gtggccggcgacctggtgcagcgcacctacagcgagccgcattgggacgccaagcgcggc
gaggtgatggcctacgagcgcgtgacgctgtatggcctgccgctggtggcgggccgccgc
gtcggatacgcccgcatcgagccggtggtggcgcgcgagctgttcatccggcacgccctg
gtcgaaggggagtggcagacccggcatcacttctttcgcgacaacgcccggctgcgcgcc
gagctcgaggagctcgaggagcgtgcccgccgccgcgacctgctggtcggcgacgacgac
gtctacgcgctctacgacgcccgcgttcccaccgaggtggtctcggcgcggcatttcgac
gcgtggtggaaacgccagcggcacaagacacccgacctgctgacgttcacccgcgccgac
ctgctgcgcaccgacgacaacgccggcaccgatcggcccaccacgtggcggacgggcgac
gccgcgctgccgctgacctaccggttcgagccgggggccgccgacgacggggtcacggtg
catgtcccgatcgacgtgctggcgcgcctggggggtgacgagttcgcctggcaggtaccc
gcgctgcgcgaggaactggtcaccgcgctcatccgctcactgccgaaagacctgcgccgc
aacttcgtgcccgcccccgacacggcacgcgcggtgctggccgcaatcgagccggccgcc
gagccgctgctgtcgtcgttgcagcgcgaattgcgccgtcgcaccggggttttggtgccc
gtcgaggcgttcgacctggacaagctgccgccgcacctgcgggtgacgttcgcggtggag
tcccctgacggcgccgaggtcgcccgcggcaaggatctgcaggagctgcaggaacgactc
acgacgccggcccgccgcgcggtggcgcacgcggtcgcgggcgagctcgagcgcaccggg
ttgcgcgactggcccgacgatctcgacgaactgccgcgcgtcatcgaacgcgccgtgcag
gggcgcaccgtgcgtggctttccggcgttcgtcgacaccggcggcgccgtcgacctacgc
gtgttggcgacgccggacgaacagcaccgggcgatcggtcccggccttcggcgattgatc
cggctcagcgttgcgtccccggtgaaagccattgcgcgtcaacttgacccgcgcacccgt
ctgacgctcggcaccaaccccgacggcgatctgtccgcgctgctggaggactgtgccgac
gccgcggccgacgcgctcatgccgacgccggtgtggacgcggggggagttcgtcgcgttg
caagaacggctgggaaagaccttggcgcccacggccgccgagattgcgcgcgcggtcgag
cgggtgctcgccgccgcccacgacgtgcgactcctgctgcccaccaacccgccgcccgcg
cactccgaggcgatcgcggacgtgcgcgcccagctcgaccggctcttgccgccgggcttt
gtcaccgcgaccggccgggcgcacctcgccgatctcacccgctatctactcgcgatccgt
cgccggctcgacgggctggcgcgcggcgcccaggccgaccgggagcggatggaccgggtg
cacgccgtgcaggacgcctacgacgaactgctgcgtgagctgccacgaacggcgaggacg
gaccccgacgtcctcgatatcgcccgccagatcgaggaactcagggtgagcctgtgggcc
cagcagctcggcacgccacgcccggtcagcgagcagcggatctaccgcgccatggacgct
gtgcgcgatcgtcgctga
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