Mycobacterium intracellulare subsp. intracellulare: MIP_04417
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Entry
MIP_04417 CDS
T02325
Name
(GenBank) Formamido pyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mid
Mycobacterium intracellulare subsp. intracellulare
Pathway
mid03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MIP_04417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mid03400
]
MIP_04417
Enzymes [BR:
mid01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MIP_04417
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MIP_04417
DNA repair and recombination proteins [BR:
mid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MIP_04417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
Auto_anti-p27
Zn_ribbon_TFIIB
DZR_2
DUF7351
Zn_ribbon_8
MHC_II_alpha
DUF3090
Zn_ribbon_NUD
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AFS15007
UniProt:
J9WKH0
LinkDB
All DBs
Position
3271143..3271928
Genome browser
AA seq
261 aa
AA seq
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MPELPDVEGFRRQLAAGLPRRRIRHVQVHDPGILRNTTAKAFARRLTGHRFAGPRRHGKW
LVLPTDGPALLIHSGMTGRPYYAASGATRDPYERLVLELDSGELRYADLRKLRGIWLADD
ADDITHVTGPQGPDALGLGLREFRAVLNSRSARSRQLKPTLMDQSVIAGLGNLLVDEICW
RAKIRPTVPVAELGDDDVKTLHAAMTRVLRTAVRHGRVPGLPRWLTRVRDEPDPRCPRCG
TPLERARVGGRATLWCPRCQP
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaactgcccgacgtggaagggttccggcggcaactggccgccgggttgccgcgg
cggcggatccggcacgtgcaggtgcacgatccggggatcttgcgtaacaccaccgcaaaa
gcgttcgcgcgcaggctgaccggtcaccgattcgccggtccacgccggcacggcaagtgg
ctcgtgctgcccacggacggcccggcactgctgatccacagcggcatgaccggccgcccc
tactatgccgccagcggggccacccgcgacccctacgagcggctcgtgctggagctggac
agcggcgaactgcgctacgccgacctccgcaagttgcgcgggatatggctggccgacgat
gccgacgacatcacccacgtcacgggcccgcagggtcccgacgcgctgggcctcggcctg
cgcgaattccgcgcggtgctgaactcccgatccgcacgctcgcgccagctcaaacccacg
ctgatggaccaatcggtgatcgccggcctcggcaatctgctggtcgacgaaatctgctgg
cgggccaagattcggcccaccgtgccggtcgcggaactgggtgacgacgacgtgaagacc
ttgcatgccgcgatgacgcgggtgctgcgcaccgccgtgcggcatggccgggtgccgggt
ttgccacgctggctcaccagggtgcgtgacgaacccgacccgcgctgcccgcgctgcggc
acgccgctcgagcgcgcccgggtgggcggccgggcgacgctgtggtgtccgcgctgccag
ccttga
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