Mycobacterium intracellulare subsp. intracellulare: MIP_05225
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Entry
MIP_05225 CDS
T02325
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mid
Mycobacterium intracellulare subsp. intracellulare
Pathway
mid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIP_05225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mid03019
]
MIP_05225
Messenger RNA biogenesis [BR:
mid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MIP_05225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AFS15523
UniProt:
J9WH94
LinkDB
All DBs
Position
complement(3844570..3846201)
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AA seq
543 aa
AA seq
DB search
MRVTALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLILPDLRHIEDRLDDIE
ALVLTHAHEDHIGGIPFLLKLRPDIPVVGSRFTLALVAAKCREHRLKPVFVEVAEGQKST
HGVFECQYFAVNHSIPDALAIAVHTGAGTVLHTGDIKLDQLPLDGRPTDLPGMSRLGDAG
VDLFLCDSTNAEHPGVGPSESEVGPTLHRLIRGAEGRVIVACFASNVDRVQQIIDAAVAL
GRRVSFVGRSMVRNMGIARELGFLRVADSDVIDIGAAEMMPPERVVLITTGTQGEPMSAL
SRMSRGEHRSITLTAGDLVVLASSLIPGNEEAVYGVIDELAKIGARVVTNAQARVHVSGH
AYAGELLFLYNGIRPRHVMPVHGTWRMLRANSKLAARTGVPEESILLAENGVSVDLVAGK
AAIAGAVPVGKMFVDGLINGDVGDITLGERLILSSGFVAVTVVVARGTGRPVVPPQLHSR
GFSEDPKALEPAVRRVEAELEALAAENITDPSRIAQGVRRTVGKWVGETYRRQPMIVPTV
IEV
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
ttgcgggtcaccgcgctgggcggcatcagcgaaatcggccgcaacatgacggttttcgaa
cacctgggccggctgttgatcatcgactgcggggtgatgttccccacccacgacgagccc
ggggtcgacctgatcctcccggatctgcgccatatcgaggaccggctcgacgacatcgag
gcgctggtgctcacccacgcccacgaggaccacatcggcggcattccgttcctgctcaag
ctgcgccccgacatcccggtcgtcggttcgagattcaccctcgcgctggtcgccgcgaag
tgccgtgagcaccgcctcaagccggtgttcgtcgaggtggccgagggccagaagagcacc
cacggcgtgttcgaatgccaatacttcgccgtcaaccactccatccccgacgcgctggcg
atcgccgtgcacaccggcgcgggaacggttctgcacaccggcgacatcaagctcgaccag
cttccgctggacggccggccgaccgacctgcccggcatgtcccgcctcggtgacgccggg
gtggacctgttcctgtgcgattcgaccaacgccgagcaccccggcgtcgggccgtcggaa
agcgaggtcggtccgacgctgcaccgcctgatccgcggcgccgagggccgcgtcatcgtc
gcgtgcttcgcctccaacgtggaccgggtccagcaaatcatcgacgccgcagtggcattg
ggccgccgggtgtcgttcgtcggccgctccatggtgcgcaacatgggcatcgcccgagag
ctcggcttcctgcgggtggccgattccgacgtgatcgacatcggcgccgccgagatgatg
ccgcccgagcgggtcgtgctgatcaccaccggcacccagggcgagccgatgtcggcgctg
tcgcgcatgtcgcgcggcgagcaccgcagcatcacgctgaccgcgggtgacctcgtggtg
ctggcgtcgtcgctgatcccgggcaacgaggaggccgtctacggcgtcatcgacgaactc
gccaagatcggggcccgcgtcgtcaccaacgcccaagcgcgcgttcacgtttcgggccac
gcctacgccggcgaactgttgttcctgtacaacgggatccggccacgccacgtcatgccc
gtgcacgggacgtggcggatgctgcgcgccaactccaagctggcggcccgcaccggcgtg
ccggaggagtcgatcctgctcgccgagaacggggtcagcgtcgacctggtcgccggcaag
gccgcgatcgccggggcggtgcccgtcggcaagatgttcgtcgacggcctgatcaacggc
gacgtcggcgacatcacgctgggcgaaaggctcatcctctcatcgggtttcgtggcggtg
accgtcgtggtcgcccgcggcaccggacgtccggtggtcccaccgcagctgcattcgcgc
ggcttctccgaggaccccaaggcgcttgagcccgccgtgcgcagggtcgaggcggagctg
gaagcgctggcggccgagaacatcaccgacccgagccgcatcgcccagggcgtccggcgc
accgtcggcaagtgggtgggcgaaacctaccgccgccagccgatgatcgtgccgaccgtc
atcgaggtctga
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