Methanocaldococcus infernus: Metin_0012
Help
Entry
Metin_0012 CDS
T01234
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mif
Methanocaldococcus infernus
Pathway
mif03410
Base excision repair
mif03430
Mismatch repair
mif03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Metin_0012
03430 Mismatch repair
Metin_0012
03440 Homologous recombination
Metin_0012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mif03400
]
Metin_0012
DNA repair and recombination proteins [BR:
mif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Metin_0012
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Metin_0012
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Metin_0012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
DHH_CID
Motif
Other DBs
NCBI-ProteinID:
ADG12685
UniProt:
D5VU73
LinkDB
All DBs
Position
complement(9254..10546)
Genome browser
AA seq
430 aa
AA seq
DB search
MELSGLEKIEKLSKEIKNRIVEYDFIKVITHHDTDGLSSGTILTKTLFRANKTFQVKVVE
HLSRNVIDKLVSKDNSLYIFADMGSGQIHDILEKEVDAIILDHHPPEIEEEFIDNIVQLN
PHLYGFDGAKEITASGTCYFVAREFGYYDLSQMAIVGMIGDMQFPPMGLNKFIVNEAREK
RYIKIFNDIIYNIYGVEIYKAMAYCTKPYIEDLNSEAKAEKFLLNLKIDPKKKDLSKEEY
KKIISHLIFKYPEEAEKLIIERVLLRHKVRDAHLLSEMLNAVGRHGYFSIGIGIGLEDDE
CIRIGNKVLWDYKKALLSEIKRVELKSLRNIKYFEGRKGYIGIVAGILAKEKPVIGYYIE
GDVAKFSARGNKKLVDRGLNLSKVMSIAKEFGGTGGGHNIASGAMVPKEKVKEFLERVDE
LIGEQLRASS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggaattatctgggttggagaagatagagaagcttagcaaggagataaaaaatagaatc
gtagagtatgactttattaaagttataactcatcatgacactgatgggcttagtagtggg
acaatcttaaccaaaaccctatttagggcaaataaaacctttcaagttaaggttgttgaa
cacctttcaaggaatgttattgataagttggttagtaaagataactctctctacatcttt
gcagatatgggaagtgggcagattcatgatatattagagaaagaggttgatgctatcatc
ttagaccatcatcctccagagatagaagaggagtttatagataacattgttcagctaaac
cctcacttgtatggatttgatggtgctaaggagataactgcaagtggcacttgctatttt
gttgcgagggagtttggctactatgatctctcccagatggctattgttgggatgattggg
gatatgcaatttcctcccatgggattaaataagtttatagtcaatgaggcaagggagaaa
agatatattaaaatattcaatgacataatttataacatttatggagttgagatttacaag
gctatggcttactgtacaaagccttatattgaagacctaaactcagaggctaaggctgaa
aaatttctattaaatttaaagatagaccctaagaagaaggatttaagtaaagaagagtat
aaaaaaattatttctcatcttatctttaaatatcctgaagaggctgagaagttaattatt
gagagagttctactaaggcataaggttagagatgctcatctcctttctgaaatgctaaat
gctgttggaagacatggctatttttccattggcatagggataggattggaggatgatgaa
tgtataagaatagggaataaagtactttgggattacaaaaaagctttattgtcagagatt
aagagagttgagctaaagagcttaagaaatatcaagtactttgaaggtaggaagggatat
attggaattgtagcaggaatcttagccaaggaaaagccagttattggctactatattgag
ggagatgtggcaaagttctcagcaagggggaacaagaagttagttgatagagggttaaac
ttaagtaaggttatgtctattgctaaagagtttggtggaactggaggagggcataacata
gcctcaggagctatggttcctaaggagaaggttaaagagttcttagagagagttgatgag
ttaataggagaacagcttagagcctcttcttaa
DBGET
integrated database retrieval system
