Methanocaldococcus infernus: Metin_0043
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Entry
Metin_0043 CDS
T01234
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mif
Methanocaldococcus infernus
Pathway
mif04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Metin_0043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mif03019
]
Metin_0043
03009 Ribosome biogenesis [BR:
mif03009
]
Metin_0043
04131 Membrane trafficking [BR:
mif04131
]
Metin_0043
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mif04147
]
Metin_0043
Messenger RNA biogenesis [BR:
mif03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Metin_0043
Ribosome biogenesis [BR:
mif03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Metin_0043
Membrane trafficking [BR:
mif04131
]
SNARE
SNARE associated proteins
Others
Metin_0043
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Metin_0043
Exosome [BR:
mif04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Metin_0043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_5
AAA_2
TIP49
AAA_14
AAA_33
AAA_22
Vps4_C
nSTAND3
AAA_28
IstB_IS21
AAA_17
Mg_chelatase
ATPase
RNA_helicase
AAA_7
DUF815
AAA_18
Zeta_toxin
ABC_tran
Sigma54_activat
TsaE
AAA_3
AAA_24
Sigma54_activ_2
ATP-synt_ab
PhoH
Parvo_NS1
AAA_30
bpMoxR
AAA_lid_PRS2_C
SLFN-g3_helicase
ResIII
Sec10_N
NB-ARC
Ran-binding
ParcG
LXG
MG280
AD
COG6_N
DUF6674
MIP-T3_C
TMP_3
TINF2_N
TnpV
DUF1664
Motif
Other DBs
NCBI-ProteinID:
ADG12715
UniProt:
D5VUA3
LinkDB
All DBs
Position
37325..40036
Genome browser
AA seq
903 aa
AA seq
DB search
MVKELKVAEAYQGDVGRGIARIDPYVMDELNLKPGDVIEIEGPKGKAYAVVYRGFLEDAG
RNIIRIDGYIRQNAGVGIGDRVKVKKVEIKEAKKIVLAPTQPIRFGPGFEDFVKRKIIGQ
VLNKGSKLTIGVLGTALTFVVVKTEPKGPVKVTEFTQVELREEPTKEVEESRIPDVTYED
IGGLKEEVRKVREMIELPMKHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGAN
FYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVERRLV
AQLLTLMDGLKGRGQVVVIGATNRPDALDPALRRPGRFDREIVIGVPDREGRKEILQIHT
RNMPLAEDVDLDYLADVTHGFVGADLAALCKEAAMRALRRVLPDIDLEAEEIPKEVLDNL
KVTMDDFKEALKDVEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKDVFDK
IGVRPPKGVLLFGPPGTGKTLLAKAVANEAGANFISVKGPEIFSKWVGESEKAIREIFKK
ARQNAPCIIFFDEIDAIAPKRGRDISSGVTDKVVNQILTELDGLEEPKDVVVIAATNRPD
IIDPALLRPGRLDRIILVPVPDEKARLDIFKIHTRGMSLAEDVDLEELAKKTEGYTGADI
EAVCREAAMLAVREGIGEPWDIEKDLRELINYLQAISGAFRALAVELNSVIKATKEKESV
SKKEFDELKRSLEKIISLSDPLREKIEKAEKDIESFLKKIEELDLKPSEKENAKKLAKYL
KDLLKKLEEMVNSIVSLKDKIAGLKEDVKAEEISEIIKSAQNILQRFGTSLDELKNALKD
IESIRLKATTKDIKVRKEHFMKALKKIKPSVSKEDMKVYERLAKEYGRATSLEESEEEDR
EVI
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggttaaagagttgaaggttgctgaagcttatcagggagatgtaggtagagggatagca
agaattgacccttatgtaatggatgaacttaacttaaaaccaggggatgttatagaaatt
gagggaccaaaaggaaaggcttatgctgtagtttacagaggtttcttagaagatgctggt
aggaatataattagaattgatggttatattagacagaatgctggagttgggattggagat
agagtaaaggttaagaaggttgaaataaaagaggctaagaagattgttttagctccaact
cagcctataaggtttggtcctggatttgaagactttgttaaaagaaagataataggacaa
gttttaaacaagggatctaaattaactataggggttttagggacagctttaacctttgta
gttgttaaaactgaacctaaagggcctgttaaggttactgaattcactcaagtagagtta
agagaagagccaactaaagaggttgaagagagtagaattccagatgtcacttatgaagac
attggaggattaaaagaagaggttagaaaagttagagagatgatagagcttccaatgaaa
caccctgagctctttgagaagttaggaattgaaccacctaagggggttctcttagttgga
ccaccaggaacagggaagactttattagccaaggctgtagctaatgaggctggagctaac
ttctatgtcataaatggaccagaaataatgagtaagtatgttggagaaactgaagagaac
ttaagaaagatatttgaagaagctgaagagaatgctccttccatcatcttcattgatgaa
attgatgctatagctcctaagagggatgaggctacaggagaagttgagagaaggttagta
gctcagctcttaaccttaatggatggattgaagggaagagggcaagttgtagttattgga
gctacaaataggccagatgctttagatccagctttaagaagacctggaagatttgataga
gagattgttataggagttccagatagagagggaagaaaggagatattacaaatacacaca
agaaatatgccattggctgaagatgttgatcttgactacttagcagatgtaacccatgga
tttgttggagctgacttagctgctctatgtaaagaggcagcaatgagagctttaagaaga
gtgcttccagatatagacttagaggctgaagagattcctaaggaagttcttgacaactta
aaggttacaatggatgacttcaaggaagctttaaaagatgttgagccatcagcaatgaga
gaggttttagttgaagttccaaatgttaagtgggaagacattggagggttagaagaggtt
aagcaagagcttagagaggctgtagaatggccattaaaggctaaggatgtctttgacaaa
attggagttagacctccaaagggagtattactatttggtccaccaggaacagggaagact
ttattagccaaggctgtagctaatgaggctggagctaacttcataagtgttaaagggcca
gagatatttagtaagtgggtaggtgagagtgagaaagctataagagagatattcaagaag
gcaagacagaatgctccatgtatcatattctttgatgaaattgatgctattgctccaaag
agaggaagagatataagctcaggagttactgataaggttgtcaatcaaatattaactgag
cttgatggtttagaagagcctaaggatgttgttgtcatagcagctacaaataggccagat
attatagacccagcactattaagaccaggaaggttagatagaatcatcttagtcccagtt
ccagatgagaaggcaaggttagacatattcaagatacacacaagaggcatgtccttggct
gaagatgttgacttagaagagcttgctaagaaaactgaaggatatactggagctgacata
gaggctgtatgtagagaggctgcaatgcttgcagttagagaaggaataggagagccttgg
gacattgagaaagatttaagagagctaattaactacttacaagcaatctctggagcattt
agagccttagctgttgagcttaacagtgttataaaggctactaaggaaaaggaaagtgtc
agtaagaaagagtttgatgaattgaagagatcattggagaagattattagcttatctgat
ccactaagagagaagattgagaaagctgagaaagatatagaaagcttccttaagaaaata
gaagaacttgatctaaaaccatctgaaaaagagaatgccaagaagttagctaagtactta
aaagacttacttaaaaagttagaggaaatggttaatagcatagttagcttaaaggataag
atagctgggctaaaagaggatgtaaaggctgaggagataagtgaaattataaagagtgct
caaaacatcctacagagatttggcacttccttagatgagctaaagaatgctctaaaggat
attgaaagtataagattaaaggctacaacaaaagacattaaagttagaaaagagcacttc
atgaaggctctcaagaagataaagccatctgttagtaaggaagatatgaaggtttatgag
aggttagctaaagagtatggaagagctacaagtttagaagagtctgaagaagaggataga
gaagttatttaa
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