Methanocaldococcus infernus: Metin_0078
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Entry
Metin_0078 CDS
T01234
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mif
Methanocaldococcus infernus
Pathway
mif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metin_0078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mif03019
]
Metin_0078
03009 Ribosome biogenesis [BR:
mif03009
]
Metin_0078
Enzymes [BR:
mif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Metin_0078
Messenger RNA biogenesis [BR:
mif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Metin_0078
Ribosome biogenesis [BR:
mif03009
]
Prokaryotic type
rRNA helicases
Metin_0078
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
NAT10_TcmA_helicase
Helicase_C_2
AAA_19
AAA_30
Utp25_C
PhoH
Cas3-like_C_2
Lip_prot_lig_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ADG12750
UniProt:
D5VUD8
LinkDB
All DBs
Position
70161..71234
Genome browser
AA seq
357 aa
AA seq
DB search
MDFKSLGLSDNTLKALKRKGFKKPTKIQEKIIPILLSEDVNIVGQAQTGTGKTAAFGLPI
IEKINDEKEIKALILTPTRELAKQVAEELKSLKGKKNLKIVEIYGGKPIKEQIYKLRGAN
IVVGTPGRLLDHIKRKTINLKNLSYFVLDEADEMLNMGFIEDVEEILKHTNDDKNILLFS
ATLPREILNLAKKYMRDYKLIKVKSSKNLIEQKHFKVSNSEKFNLLCKIINEENFYGLIF
CKTREDVKNLARKLIEKGYSAEAFHGKLSQFRREKILKRFKMKKINILVSTDVAARGIDI
EGLTHVINYSLPQNPEYYVHRIGRTGRAGKRGKAITFVEPHEYKKYAHMKRCLCKKL
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaatctttaggtttatcagataatactttaaaagctctaaaaagaaagggt
tttaaaaaacctacaaaaattcaagagaaaattattcctatacttttaagtgaagatgta
aatattgttggccaagcacaaactggtactggaaagactgcagcttttggattaccaatt
attgagaaaataaatgatgaaaaagaaattaaagctctaattttaacacctacaagagag
ttagctaagcaagttgctgaagagcttaaatctctaaaaggtaaaaagaatttgaaaata
gttgaaatttatggaggaaagcctattaaagagcaaatttataagttaagaggagctaat
atagttgtaggaactcctgggagacttttagatcacataaagagaaaaaccattaattta
aagaatctctcatattttgtcttagatgaagctgatgaaatgctaaatatgggatttatt
gaagatgttgaagaaatattaaagcatacaaatgatgataaaaatattcttctcttctca
gcaaccttaccaagggaaatattaaacttagctaagaaatatatgagagactataaatta
ataaaagttaagagttcaaaaaatttaattgagcagaagcactttaaagtttctaactca
gagaaatttaatttattatgtaaaattattaatgaagaaaatttctatggcttaattttt
tgtaagacaagggaagatgtaaaaaatcttgcaagaaagcttattgaaaaaggatattca
gcagaagcttttcatggaaagctctctcaatttaggagggagaagattttaaaaagattt
aagatgaagaaaattaatatattagtttcaactgatgtagctgcaagagggatagatatt
gaagggctaacccatgttattaactattctctccctcaaaatcctgagtactatgtgcat
agaataggaagaactggaagagctgggaaaagagggaaagctataacatttgttgagccc
catgagtataaaaaatatgcccatatgaaaagatgcttgtgcaaaaaattatag
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