Methanocaldococcus infernus: Metin_0108
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Entry
Metin_0108 CDS
T01234
Name
(GenBank) Xylose isomerase domain protein TIM barrel
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
mif
Methanocaldococcus infernus
Pathway
mif03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Metin_0108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mif03400
]
Metin_0108
Enzymes [BR:
mif01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
Metin_0108
DNA repair and recombination proteins [BR:
mif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Metin_0108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
UvdE
Motif
Other DBs
NCBI-ProteinID:
ADG12780
UniProt:
D5VQC7
LinkDB
All DBs
Position
complement(98384..99169)
Genome browser
AA seq
261 aa
AA seq
DB search
MLIFGSACHGDEFKFSELLKSLNLNALELEFVNGVYMKEDYAKILKEKNKDLKFSAHAPH
YINLNANEKEKIERSIYRLIKSAKVLRHCGKDLVFHPGYYLNKSKEECYKNIKENLQKVL
DYFNERNIDITLRPETTGRVSQFGTLEETLTLCSELSLKPCIDFPHLYARSYGKINSYED
FYRILEKIEESVGVKDMHIHMSGIEFGKGGEKRHLPLERSNFNYKDALRALKDFCAEGKV
ICESPLLEKDALLMKRFYESL
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
ttgctaatctttggctctgcctgtcatggagatgaatttaagttctcagaattacttaag
tccttaaatcttaatgccttagagcttgagtttgtcaatggagtttatatgaaagaggac
tatgctaagatattaaaggagaagaataaagatttaaaattttcagctcatgctcctcac
tatattaatttaaatgccaatgaaaaggaaaaaattgagagaagtatttatagattaata
aagagtgccaaggttcttagacactgtgggaaagatttagtgtttcatcctggctactat
ttaaataaaagtaaagaagagtgctacaagaatattaaagagaatttacagaaagtttta
gactattttaatgagcgcaatattgatattacactaagaccagaaaccactggaagggtt
tctcaatttggaaccttagaagaaactttaactttatgctcagagctaagcttaaagcct
tgtatagacttcccccacttgtatgcaaggagctatgggaaaataaatagttatgaagac
ttttatagaatcttggagaagattgaggagagtgttggagttaaggacatgcatattcac
atgtcaggaatagagtttggcaaaggtggagaaaagagacatctgcccttagaaaggtca
aactttaactataaagatgccttaagagctttaaaagacttctgtgctgagggaaaggtt
atttgtgaaagccctcttttagaaaaagatgctcttttaatgaaaagattttatgagagc
ttataa
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