Methanocaldococcus infernus: Metin_0646
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Entry
Metin_0646 CDS
T01234
Name
(GenBank) RNA polymerase Rpb1 domain 5
KO
K03042
DNA-directed RNA polymerase subunit A" [EC:
2.7.7.6
]
Organism
mif
Methanocaldococcus infernus
Pathway
mif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Metin_0646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mif03021
]
Metin_0646
Enzymes [BR:
mif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Metin_0646
Transcription machinery [BR:
mif03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Metin_0646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
Intein_splicing
LAGLIDADG_3
Hom_end
DUF483
Fe_dep_repr_C
DUF1525
Pcc1
Motif
Other DBs
NCBI-ProteinID:
ADG13315
UniProt:
D5VRW2
LinkDB
All DBs
Position
complement(573718..576186)
Genome browser
AA seq
822 aa
AA seq
DB search
MDIEKLRERIYSLDIPDSLKNKLFEKLSKEEGLTEEMIEEIIDEVVKSYKNALIEPYEAV
GIVAAQSIGEPGTQMSLPYDEKIIVKEGENVRIVEIGKFVDECIDKFGFIKQGVHEICDL
PVEIYALSLDQDEKVHWKRIISVIRHKFNGKLIKIKTRSGRTIVATPYHSFVVRKDNRVV
PIEGRELKIGDRIPAIRYMPLNCISEIDLGEFTNYSTNRTLKLDFDFGYFLGLYLADGYS
TKYFISIPNKNREVVKIVKRLAEKLGIRLEVGYEIKLYSPVLSELIQNFDKKEKRIPDFV
FSSEKEFVRGLLQGYFDGNGKVDVEKKKIKIYSQFKELIDGISLLLTRFGIFCVKRENGI
EISHIYAKKFAEEINSSLPKRAEELNKLVKSLESKVTYDPIDMIPSIGTILLDISKKLGY
PSCKVEKFIKNQKIGRLTLQRHLLNLEKLAKERGFEVEELKVLKKAVESDVVWDEIVSIE
EVDCNNYVYDLSVEGLETFTTAEGLITHNTMRTFHYAGVAELNVTLGLPRMIEIVDARKE
PSTPIMEVYLTDEYKYDKEKAEEVAKRIESLTLQDVAKSIGIDLWTQSIKVELDEKVIED
RGLDIEEIEEAIRKKVRVKIEREGNILYLKVKTPSVKSLRKRIPKIKNILLKGIPGITRV
LVKKDDKTGEYVIHTQGSNLREVFKIEGVDTRRTITNNIIEIQEVLGIEAARNAIINEMK
NTLEQQGLEVDIRHLMLVADMMTADGEVKPIGRHGVAGEKGSVLARAAFEETVKHLYSAS
EKGEVDKLKGVIENVIVGKPIFLGTGCVRLEIDREYEEGKKE
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggatatagagaagctaagggaaagaatttacagcttagatatcccagactctttaaaa
aataaactttttgaaaaactttctaaggaagagggcttaactgaagagatgatagaggag
ataattgatgaagttgtaaaatcctataaaaatgctctaatagaaccttatgaagctgtt
ggaattgtagctgctcaatccattggagagccaggtacacagatgtctctaccttatgat
gagaagataatagttaaagaaggagagaatgttagaatagttgagataggtaaatttgtt
gatgaatgtatagataaatttgggttcattaaacaaggagttcatgagatctgcgatcta
cctgtagagatctatgcactaagcttagaccaagatgaaaaggttcattggaagagaatt
ataagtgttataaggcataaattcaatggaaagcttataaagattaaaacaagatcagga
aggacaatagtagcaactccataccattcctttgttgttaggaaggataatagagtagtt
cctattgagggtagagaacttaaaattggagacagaattccagcaataagatatatgcca
ctaaactgtatctctgaaattgatcttggtgaattcactaactactcaacaaatagaact
cttaagttagactttgattttggatacttcttaggcttgtatcttgcagatggttactca
acaaagtatttcatatctatacccaataaaaatagagaagttgttaaaatagttaagaga
cttgcagaaaagcttggaattaggttagaagtaggttatgaaataaaactttactctcca
gtattaagtgaacttatccaaaactttgataaaaaagagaagagaattcctgattttgta
tttagctctgaaaaggaatttgttagaggattattacaaggatactttgatggaaatgga
aaagtggatgttgaaaaaaagaaaattaagatttattcacaatttaaagaacttattgat
ggaatctcactattactaacaagatttgggatattctgtgttaagagagaaaatggtatt
gaaatctctcacatatatgctaagaagtttgcagaggaaattaattcttctctacctaaa
agagctgaagaacttaacaagttggttaagtctttagaatctaaagttacctatgatcct
atagatatgattccttcaataggcacaatactcttagatatatcaaagaagttaggatat
ccatcatgtaaagtagagaaatttattaaaaatcagaagataggaaggttaactttacag
aggcatctcttaaaccttgaaaaacttgctaaggagagagggtttgaagttgaagagtta
aaagttcttaaaaaagctgtagaatcagatgtagtttgggatgaaatagtttctattgaa
gaagttgattgcaacaactatgtctatgacttaagtgttgaaggtttagaaacatttaca
acagctgaaggtttaataactcataacacaatgagaaccttccactatgcaggggttgct
gagcttaacgttaccttaggtttgccaaggatgatagaaatagttgatgcaaggaaagag
ccttcaactccaattatggaggtttatctaacagatgaatataagtatgataaagagaag
gctgaagaagtggccaagaggatagagagcttaaccttacaagatgtagccaagtctata
ggaatagatctatggacacagtctataaaagttgagttggatgagaaagttatagaggat
agaggcttagatatagaggaaattgaagaagccattagaaagaaggttagagtgaagatt
gaaagagaaggaaatattctatacttaaaagtaaagactccttcagttaagtcattgaga
aagagaattcctaagattaagaatatattactaaagggaatcccaggaataacaagggtt
ttagttaaaaaggatgacaaaactggagagtatgtaatacatactcaaggatctaactta
agagaagtgtttaaaatagagggagtagatacaagaagaaccataacaaataatattatt
gaaattcaagaagttttaggaatagaggctgcaaggaatgctataataaatgagatgaag
aatactttagaacagcaagggttagaggttgatataaggcatctaatgttagttgctgac
atgatgacagctgatggtgaggttaagccaataggtaggcatggagtggctggagaaaag
ggaagtgtcttagcaagggcagcatttgaagagactgttaagcacttatactcagcctct
gaaaagggagaggttgataagttaaaaggagttatagagaatgtcattgttggaaagcca
atattcttaggaacaggttgtgttaggttagagatagatagggaatatgaagaaggtaaa
aaagaatga
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