Methanocaldococcus infernus: Metin_1171
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Entry
Metin_1171 CDS
T01234
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mif
Methanocaldococcus infernus
Pathway
mif03410
Base excision repair
mif03430
Mismatch repair
mif03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Metin_1171
03430 Mismatch repair
Metin_1171
03440 Homologous recombination
Metin_1171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mif03400
]
Metin_1171
DNA repair and recombination proteins [BR:
mif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Metin_1171
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Metin_1171
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Metin_1171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
DHH_CID
Motif
Other DBs
NCBI-ProteinID:
ADG13824
UniProt:
D5VTC1
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All DBs
Position
1054185..1055549
Genome browser
AA seq
454 aa
AA seq
DB search
MLREIERARKFILKNLDKKFLIVTHVDTDGLTSRVILQKLAERLNLDADYLFLTQLTPST
VEEVPFNDYDIIIMADLGSSHLSLLKEVRKKIIILDHHQPENIKLSNIIHVNPHLEGRSS
LDLCGASVSYLLARAFGNNIDLAKYAILGAVGDVQNIWGRLEGLNRAILSDAILSGDLVV
KSDLQLYGRCSRPLYISLRYWSDVRTDLLNNDENIIKYIKYINKKHNLNIDPTSSLSEID
YNEKKILGNELIIKALRYVPKGWVRFLPKVVFGEVYELRDEEEKILIDLSEFSTCINACT
RYGDYETALRVLMGDRGKYLKRIKENLREHRKNLREALKHVKNDVEIIEEKKFQYFVTDK
IEKNIIGIVASLSYGIDEINWLKPILAFSELSEGYKVSARCPRLMCLAENINLGRAIKLA
SLKVNGSGGGHSFASGAYIPEEKERFIKYFGECL
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgctgagggaaatagagagagcaaggaaatttatattaaagaatttggacaaaaaattc
ttaattgttactcatgttgatactgatgggttaacttcaagggttattttacaaaagtta
gctgaaagattaaacttagatgctgactatctctttttgacacaattaacacccagtact
gtagaagaggttccatttaatgactatgacatcataattatggctgatcttggtagctct
catttaagcctgttaaaagaagtgaggaagaaaattattatcttagatcatcatcagcca
gagaatataaagttaagtaatattattcatgtaaatcctcatttagagggaagaagtagc
ttagatctctgtggagccagtgtctcttacttgttagcaagagcttttggaaataatata
gatcttgctaagtatgccatcttaggagctgttggagatgtgcaaaacatttggggaagg
ttagagggcttaaatagagctattttatcagatgctattctctcaggagacttagtggtt
aagagtgatctacaactctatggaagatgctcaaggcccctctatatctctctaagatac
tggagtgatgttaggacagatctactaaacaatgatgaaaatataattaaatatattaag
tatataaataaaaagcataacttaaacattgatcctacttcaagcctctcagagattgat
tacaatgaaaaaaagatccttggaaatgaattgataattaaagccttaagatatgtgcca
aagggatgggttagatttttacccaaggttgtgtttggagaggtttatgagttgagagat
gaggaggagaagatattaattgacttatcagaattctcaacctgtataaatgcctgtaca
agatatggggattatgaaacagcattaagagttttgatgggagatagaggaaagtattta
aaaaggatcaaagaaaatctaagagagcataggaaaaatttaagggaagctttaaagcat
gttaaaaatgatgttgaaattattgaggagaaaaagtttcaatactttgtaacagataag
atagaaaaaaatattattggaatagtggcaagtctaagctatggaattgatgagattaac
tggcttaagccaatcttagccttctctgagcttagtgaaggatataaagtttcagcaagg
tgtccaaggctaatgtgtttggctgaaaatataaacttaggaagagctataaagttggct
tctttaaaagttaatggctctggaggagggcatagctttgcctctggagcttacatacca
gaggaaaaggagaggtttataaaatactttggagagtgcttataa
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