Methanotorris igneus: Metig_1439
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Entry
Metig_1439 CDS
T01510
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mig
Methanotorris igneus
Pathway
mig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metig_1439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mig03019
]
Metig_1439
03009 Ribosome biogenesis [BR:
mig03009
]
Metig_1439
Enzymes [BR:
mig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Metig_1439
Messenger RNA biogenesis [BR:
mig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Metig_1439
Ribosome biogenesis [BR:
mig03009
]
Prokaryotic type
rRNA helicases
Metig_1439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
COG2_N
Utp25_C
NDK
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AEF96974
UniProt:
F6BAG1
LinkDB
All DBs
Position
complement(1475577..1476881)
Genome browser
AA seq
434 aa
AA seq
DB search
MNLSFKELGLSENTLKALEKKGFKEPTEIQEKTIPILLNGDVDVVGQAQTGTGKTAAFGL
PLIEKIDENSKDVQALILTPTRELAIQVSEEIDSLKGEKKLKILPVYGGQPIEPQIRQLK
RGVHIVVGTPGRILDHIRRGSLNLKNISYLVLDEADEMLNMGFIDDVEEILRHTNKNKRV
LLFSATLPRTILNLAKRYMEEYRLVSVKKETLTTNLVEQIYYEVSNSKKFEALCRVIDVE
DDFYGLVFCKTRADVNEVANKLIEKGYEADALHGDIAQKQRERILNRFKKKRINILVATD
VAARGIDINNLTHVINYSLPQNPESYVHRIGRTGRAGKKGTAISFVTPNEYRKLKYIKKI
AKVNIRKEKLPEIDDVINAKKSKILNNIVEIIKSEDYQEYVEISQELINEFGAERALAAL
LKYVFKDKLVIIGD
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgagttttaaagaattaggtttatcagaaaatacattaaaagctttagaaaaa
aaaggatttaaagaacctactgaaattcaggaaaaaacaattccaattcttttaaatgga
gatgttgatgtcgtagggcaggcacaaacaggaaccggaaagacggcagcgtttggatta
ccgttaattgaaaagattgatgagaattcaaaagacgtgcaggcattaattctcactcct
acaagagaattggctatccaagtttcagaggaaatagattctttaaaaggagaaaaaaag
ctaaaaatattgccagtatatggaggacaaccaatagaaccgcaaattaggcaattaaaa
aggggcgttcacatagtggttggaacacccgggagaatattagaccacattagaagaggt
agtttaaatttaaaaaatatctcctatttggttttggacgaggcagatgagatgctaaac
atgggattcattgatgatgtagaggagattttaagacacactaataaaaataaaagagtt
cttctcttttctgcaacattgccaagaaccatattaaacttagcaaaaaggtatatggaa
gaatatagattagtaagtgtgaaaaaagaaacactcactacaaatttagtggagcagatt
tattatgaggtctccaactcaaagaaatttgaggcactatgcagagttatagatgttgaa
gatgatttctatggattggtattttgtaaaacaagggcagatgtgaacgaagtcgcaaat
aaacttattgaaaaaggatatgaagcagatgcattgcatggtgatattgcccaaaaacaa
agagaaagaatactaaatagatttaagaaaaagagaatcaatattttagttgctacagat
gttgctgcaagaggtattgatattaacaacttaacacacgtgataaactactctcttccc
caaaatcctgaatcttatgtgcataggataggaagaacagggagggctggaaaaaaagga
actgctataagttttgttacgcctaatgaatatagaaaactcaaatatatcaaaaaaatt
gcaaaggtaaatattagaaaagaaaaactccctgagatagatgatgttataaatgcaaaa
aaatcaaaaattttgaataacatcgtagaaattatcaaatcagaggattaccaagagtat
gttgaaatatctcaagaattaataaatgagttcggagcggagagggctttagctgctctt
ttaaagtatgtatttaaagataagttggtgattattggtgactaa
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