Microbacterium sp. BH-3-3-3: BJP65_04150
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Entry
BJP65_04150 CDS
T04827
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mih
Microbacterium sp. BH-3-3-3
Brite
KEGG Orthology (KO) [BR:
mih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mih03016
]
BJP65_04150
Enzymes [BR:
mih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BJP65_04150
Transfer RNA biogenesis [BR:
mih03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BJP65_04150
Prokaryotic type
tRNA splicing ligases
BJP65_04150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
BEX
Motif
Other DBs
NCBI-ProteinID:
AOX45094
LinkDB
All DBs
Position
complement(878419..879588)
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AA seq
389 aa
AA seq
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MQKLTERLVSWASLIDDKTIEQARTSSRMPFIYPHLALMPDAHLGLGATVGSVIPTLGAI
MPAAVGVDIGCGMIAVKTQFTSSDLAGRDLAELRQQIERAIPLSAGRDNRKIVATAEPRV
AELESLAEKAEFDPAKYAGHWRHQLGSLGSGNHFIEISLDENDDVWMFLHSGSRGVGNRI
AQHHIKVAQRLAKQWWIELPHPDLAYLVEGTPEFTRYIRELRWAQHFALLNREEMMDRVA
NQLGRFLDTTVEERERINCHHNFTESERHFGKRVWVSRKGAIMADEGRPGLIPGSMGTAS
YVVEGRGNPVALNSSPHGAGREYSRSAARKTFTHEHLRDAMAGIEYRDTDAFIDEIPQAY
KPIDRVMADAADLVSVRHTLRQIVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagctcaccgaacgactggtgtcgtgggcgagcctgatcgatgacaagaccatc
gaacaggcccgtacctcgtcacgcatgccgttcatctacccccacctcgccctcatgccc
gacgcccacctgggcctgggtgcgacggtcgggtcggtcatcccgactctcggagcgatc
atgcccgcggccgtcggggtcgacatcggctgcggcatgatcgcggtcaagacgcagttc
acgtcgtccgatctggccggtcgcgacctcgcggagctgcgccagcagatcgagcgtgcc
atcccgctgtcggccggtcgcgacaaccgcaagatcgtcgccaccgccgagccgcgcgtg
gccgagctcgagtcgctcgccgagaaggccgaattcgaccccgcgaagtacgccggtcac
tggcgtcaccagctcggttcgctgggcagcggcaaccacttcatcgagatctcgctcgac
gagaacgacgacgtgtggatgttcctgcattccggctcccggggcgtcggcaaccgcatc
gcgcagcaccacatcaaggtcgcgcagcgtctggcgaagcagtggtggatcgagctcccg
catcccgacctggcgtacctcgtcgaggggaccccggagttcacgcgctacatccgcgag
ctccggtgggcacagcacttcgccctgctgaaccgtgaggagatgatggatcgcgtcgcg
aatcagctcggacgcttcctcgacacgaccgtcgaggagcgggagcgcatcaactgccac
cacaacttcacggagtccgagaggcacttcggcaagcgcgtgtgggtctcgaggaagggt
gccatcatggccgacgaaggtcggccggggctcatccccgggtcgatgggcaccgcgtcg
tacgtcgtcgaggggcgcggcaatcctgtcgcgctgaactcgtcaccgcacggagcaggc
cgggagtactcgcgatcggcggcccgcaagaccttcacgcacgagcatttgcgcgacgcg
atggcgggcatcgagtaccgcgacaccgacgcgttcatcgacgagatcccgcaggcgtac
aagccgatcgatcgggtcatggcggacgccgccgacctggtgagcgtgcgacacacgctg
cggcagatcgtcaacgtgaagggcgactga
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