Microbacterium sp. BH-3-3-3: BJP65_07225
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Entry
BJP65_07225 CDS
T04827
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mih
Microbacterium sp. BH-3-3-3
Pathway
mih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJP65_07225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mih03019
]
BJP65_07225
03400 DNA repair and recombination proteins [BR:
mih03400
]
BJP65_07225
Enzymes [BR:
mih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJP65_07225
Messenger RNA biogenesis [BR:
mih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJP65_07225
DNA repair and recombination proteins [BR:
mih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJP65_07225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
TetR_C_27
PSD2
SelB-wing_2
Motif
Other DBs
NCBI-ProteinID:
AOX45619
LinkDB
All DBs
Position
complement(1558313..1560352)
Genome browser
AA seq
679 aa
AA seq
DB search
MTYPGAAPESYADAPPESYDTPDDPYAGADWDPDLFAPPDDLDAPPPPTDAANSRFARAA
VATGTARELPAVRDFTGRDPREVLHEVYGYDAFRGDQADIVQHVVDGGDAVVLMPTGGGK
SVTYQVPALVRPGTGLVVSPLIALMHDQVEALIANGVRAGYLNSTQAPAERQAVEQAFLA
GELDLLYVAPERLNGAQTLGLLSRGRLSVIAIDEAHCVSQWGHDFRPDYLALGDLAERFP
GVPRMALTATATTATAQEIVERLRLRDARGFVASFDRPNIQYRIDAKVDPRRQLVQFIKA
QPEGSAGIVYALSRKSVEQMAAYLCTQGLDALPYHAGLDASVRAANQSRFLRDDGVIMVA
TIAFGMGIDKPDVRFVAHIDLPKSVEGYYQETGRAGRDGDPSVVWMAYGLGDVVQQRRMI
DQSPGDRSYKMRLGQHLDAMLALCETVGCRRQNLLEYFGQKSDPCGNCDTCLTPPDTWDG
LVAAQKLLSTIVRLQRERGQAFGAGHLIDILRGAKTERIAQQGHDRLSTYGLGADLSDQD
WRSVIRQLLARGIIAAQGDYGTLALSEASAGVLRGESPVPLRRDALGRTGGGGSTRQRKS
SADDVAPADRDLFEALRAWRAEKAREQGVPAYIVFGDATLRAIAAARPASTGDLDGITGI
GAKKREAYGDGILTVVAAN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtgacatatcccggcgccgcacccgagtcgtacgccgacgcgccgcccgagtcgtacgac
acccccgacgacccctacgcgggagcggactgggaccccgatctgttcgccccgcccgac
gacctcgacgccccgccgccgccgacggatgccgcgaactcgcggttcgcccgcgccgcg
gtcgcgacgggcaccgcccgcgagctcccggccgtgcgcgacttcaccggacgcgatccg
cgcgaggtgctgcacgaggtctacggctacgacgcgttccgcggcgaccaggccgacatc
gtgcagcacgtcgtcgacggcggcgacgcggtggtgctcatgcccaccggcggcggcaag
agcgtcacgtaccaggtgcccgccctcgtgcgcccgggcacgggcctggtcgtcagcccg
ctgatcgccctcatgcacgaccaggtcgaggcgctcatcgccaacggcgtgcgtgccggg
tacctcaactccacgcaggcccccgccgagcggcaggcggtggaacaggccttcctcgcc
ggcgagctcgatctgctctacgtcgcccccgagcgcctcaacggcgcgcagacgctgggg
ctgctgtcgcgcggacgcctgagcgtcatcgcgatcgacgaggcccattgcgtgtcgcag
tggggtcacgacttccgacccgactacctcgcgctgggcgacctcgccgagcggttcccc
ggtgtgccgcgcatggccctcaccgccaccgcgaccacggcgaccgcgcaagagatcgtc
gaacgtctccgtctgcgcgacgcccgcggcttcgtcgccagcttcgatcgcccgaacatc
cagtaccgcatcgacgccaaggtcgacccgcgtcgtcagctggtgcagttcatcaaggcg
cagcccgagggctcggcgggcatcgtgtacgcgctcagccgcaagagcgtcgagcagatg
gcggcgtacctctgcacgcaggggctcgacgcgctgccgtaccacgccggtctcgacgcc
tcggtgcgggcggcgaaccagtcgcgcttcctccgcgacgacggcgtcatcatggtcgcc
acgatcgccttcggaatgggcatcgacaagcccgacgtgcgcttcgtggcgcacatcgac
ctgccgaagtccgtcgaaggctactaccaagagacgggccgcgccggccgcgacggcgat
ccctcggtcgtctggatggcctacggcctgggcgacgtcgtgcagcagcgccgcatgatc
gaccagtcgccgggcgaccgctcgtacaagatgcgcctggggcagcacctcgacgccatg
ctggcgctgtgcgagacggtcggatgccgtcggcagaacctcctcgagtacttcgggcag
aagtccgacccgtgcggcaactgcgacacctgcctcaccccgcccgacacctgggacggc
ttggtcgcggcgcagaagctgctgtcgaccatcgtgcgtcttcagcgcgagcggggccag
gcgttcggtgcgggccacctcatcgacatcctgcgcggagccaagaccgagcgcatcgcc
cagcaggggcacgaccgactgagcacctacgggctcggcgccgacctgtccgatcaggac
tggcgcagcgtcatccgtcagctcctcgcccgcgggatcatcgccgcgcagggcgattac
ggcacgctcgcgctcagcgaggcgtcggccggggtgcttcggggcgagtcgcccgttccc
cttcgccgcgatgctctcgggcgcacgggcggcggcggttcgacccggcagcgcaagtcg
agcgccgacgacgtcgcgcccgccgatcgcgacctgttcgaggccctgcgcgcctggcgc
gccgagaaggcccgcgagcagggggttccggcgtacatcgtcttcggtgacgccactctg
cgcgcgatcgcggcggcgcgacccgcctcgaccggcgacctcgacggcatcaccggcatc
ggtgccaagaagcgcgaggcgtacggcgacggcatcctcacggtggtcgcggcgaactga
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