Microbacterium sp. BH-3-3-3: BJP65_14680
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Entry
BJP65_14680 CDS
T04827
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mih
Microbacterium sp. BH-3-3-3
Pathway
mih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJP65_14680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mih03019
]
BJP65_14680
03400 DNA repair and recombination proteins [BR:
mih03400
]
BJP65_14680
Enzymes [BR:
mih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJP65_14680
Messenger RNA biogenesis [BR:
mih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJP65_14680
DNA repair and recombination proteins [BR:
mih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJP65_14680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Dimerisation
HEM4
PcrA_UvrD_tudor
DUF3553
Cas3-like_C_2
Tt1218-like
Motif
Other DBs
NCBI-ProteinID:
AOX46882
LinkDB
All DBs
Position
complement(3178478..3180127)
Genome browser
AA seq
549 aa
AA seq
DB search
MNAPATLEQSARTARDVFGWDDLLPGQAEAIDAVVSGRDTLVVFPTGAGKSAVYQIAGCE
LGGVTVVISPLLALQRDQIDSIDAAPDAPAAVALNSRAGAAARATAWAAIEGDEAVYAFL
APEQLANPEVFDRLANADVRLIVVDEAHCVSAWGHDFRPDYARIGDVVDALGHPPVLALT
ATASAPVRDDIVASLRMREPHLEVRGMDRPEIHMAVRRHEHDADKRRAVLADVQDAGGPA
LLYVATRKGTETYADELGALGLRAAAYHGAMAQKRRDEVHTAWSAGELDVVVATSAFGMG
VDKSDVRLVVHADVTESLDSYAQEIGRAARDGQPARAILHYRAEDFSLRSFFAGGHTKRA
DIAGVWDVLQRADRPMRAKDIADEGGRSVRAIGRVLNHLVACDLAVSGAEGVSILAKVSA
GDAVSAVRERDEAEERIRASRIEIMRGYAETVHCRRRALLEYFGVETPSHCGSCDRCDTG
AAAPIDEPAAAADTDGIRIDSTVEHGEFGVGTVMAIEDDRLTVFFADHGYKVLARAAFER
GILELGEAA
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgctcccgccaccctcgaacagtccgcccgcaccgcccgcgacgtcttcggctgg
gacgacctgctgccgggccaggccgaggcgatcgacgcggtcgtgagcggccgcgacacc
ctggtggtcttccccaccggtgccggcaagtcggccgtgtaccagatcgccgggtgcgag
ctcggcggggtcacggtcgtcatctcgcccctgctggccctccagcgcgaccagatcgac
tccatcgacgcggctcccgacgcccccgccgccgtcgccctgaactcccgggccggtgcc
gccgcgcgcgccacggcgtgggcggccatcgagggcgacgaggcggtctacgccttcctg
gcccccgagcagctcgcgaaccccgaggtgttcgaccgcctcgcgaacgccgacgtgcgg
ctcatcgtcgtcgacgaagcgcactgcgtctcggcatgggggcacgacttccgccccgac
tacgcgcggatcggcgacgtcgtcgacgcactcggccaccctcccgtgctggcgttgacg
gccacggcatccgcccccgtccgtgacgacatcgtcgccagcctgcgcatgcgcgagccg
cacctcgaggtgcggggcatggaccgccccgagatccacatggccgtgcggcgacacgag
cacgacgccgacaagcgtcgcgccgtcctcgccgacgtgcaggatgccggcggccctgcg
ctgctgtacgtggcgacccgcaagggaaccgagacctacgccgacgagctgggcgcactg
ggtctgcgggcggcggcctaccacggggccatggcgcagaagcggcgcgacgaggtgcac
acggcgtggagcgcgggcgagctcgacgtggtcgtggcgacctcggcgttcggcatgggc
gtcgacaagagcgacgtgcgcctggtcgtgcacgccgacgtcaccgagtcgctcgactcc
tacgcgcaagagatcggccgggcggcgcgcgacggtcagccggcgcgggcgatcctgcac
taccgcgccgaggacttctcgctccggtcgttcttcgcgggcggccacaccaagcgcgcc
gacatcgcgggcgtctgggacgtgctgcagcgcgccgacaggccgatgcgcgcgaaggac
atcgccgacgagggcggtcgttccgtgcgcgccatcggccgggtgctgaaccacctggtc
gcgtgcgatctggccgtatcgggggccgagggcgtctcgatcctggcgaaggtctcggcc
ggtgacgcggtgagcgccgtgcgtgagcgcgacgaggccgaggagcgcatccgcgcgtcg
cgcatcgagatcatgcgcggctacgccgagacggtccactgccgacgccgggccctgctc
gagtacttcggcgtcgagaccccgagccactgcggatcgtgcgaccgctgcgacaccgga
gccgccgcgccgatcgacgaaccggccgccgcggccgacaccgacggcatccgcatcgac
tccacggtcgaacacggcgagttcggcgtgggcacggtcatggcgatcgaagacgaccgc
ctgacggtgttcttcgccgatcacggctacaaggttctcgctcgcgcggcgttcgagcgc
ggcatcctcgaactcggcgaggcggcgtag
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