Microbacterium sp. BH-3-3-3: BJP65_14760
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Entry
BJP65_14760 CDS
T04827
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mih
Microbacterium sp. BH-3-3-3
Brite
KEGG Orthology (KO) [BR:
mih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mih03019
]
BJP65_14760
Enzymes [BR:
mih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BJP65_14760
Messenger RNA biogenesis [BR:
mih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BJP65_14760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
T2SSE
ResIII
HA2_N
nSTAND3
UvrD-helicase
SLFN-g3_helicase
AAA_30
NACHT
SRP54
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AOX46895
LinkDB
All DBs
Position
complement(3197405..3201592)
Genome browser
AA seq
1395 aa
AA seq
DB search
MSVEPVIVYPPELPVSAARDEIARAIRDHQVVIVAGATGSGKTTQLPKICLELGRTSIAH
TQPRRIAARTIAERIAEEMQVPLGSTVGYKVRFTDKVSADTRVALVTDGILLNEIHRDRL
LRRYDTIIVDEAHERSLNIDFLLGYLRRILPKRPDLKVIVTSATIDPESFARHFAAPPAE
PGGDPVLAPVIEVSGRTYPVEIRYRPAGGAEIVEGAGETPEDGDADGTDAASSRRRQASG
PQKVRSSARPAAKPGRDDDDVDEVGAVVAALRELDRESSGDVLVFFPGEAEIRDAADAIR
GAYRNDAAPTEVLPLYGRLSAAEQHRVFERSSVAGVRRRVILATNVAETSLTVPGIRYVV
DTGTARISRYSNRSKIQRLPIEAVSQASAQQRSGRAGRTSPGIAIRLYSEEDFTRRPEYT
EPEILRTSLASVILQMLSLGFGDIQAFPFLTPPDSRGVKAAFDLLVELGAVKLPARGESG
TPRLTEIGREISRLPIDPRFARMLIEARRNDVQSEVLAIVSGMSIQDVRERPEERRDEAD
RFHARFTDPTSDFLSLLNLWEYLQEKQAELGSSAFRRLCRSEHLNYVRVREWVDVHRQLR
SLGGERGSGDGGRGGEGGRGRGGRNPVPLSAVSDPSRPHDSGHGSHESGRGSQRGPQLDV
SAPEGHAAGDAIHRAILSGLLSHLGILDPRTVAQAKDRKAPGETRPTKGEYIGARGARFA
IFPGSGLKKRRPSAVMAAELVETSRLFARTVAAVDPAWAEDLAPDLVKRSLSEPHWSKDA
GAAAAYEKVTLFGVELVGRRRVQLARFDRPLAREMFVRHALVEGEWDPSVLDKRLTAFLR
RNQEQRRLLEKIEERERRRDILIGDEAVFAFYNSRIPADVSDVRSFEAWWKDASNRTPHL
LDLRESDLTGDRAQGDDRAFPARWQQGDQTLNLAYRFEPGAPDDGVTVVVPLPLLAQLRP
DGFDWQVPGMRDELVTALLRALPKTIRRNVVPAADWAEKFSAELAEKGPEQANGLPRTTL
VDSLAALVQRVANQRVSAADFELERVPGHLMVSFRAVDTRGRAIGSDRDLGALQRRLADK
ARSSVESTIARPSTRASARVAEASPAFASRAKLTTWDLDELTEVVDTPVAGGVVRGYPAL
VDEGDSVALRVEATPEDAARNTRAGIRRLMLLAVPSPATYVLDHLTANEKLALAASPYQN
AKALIEDARVALADDILRRETPSGLVRTRADFERVRDAFSAASVDRTFQTVSLAAKILLG
QREVERAMKDAASITLLGALNDVRGQLKGLLFSGFLSRAGLPRLQHYPRYLAGALDRVKT
LSDNPGRDRQRMTEYERTAAGFVEAGGAMPLPADAPANLVQTRWLLEELRVSLFAQRLGT
AEPVSPQRIAKALKS
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgtcgaacccgtcatcgtctacccgcccgagctgcccgtcagcgccgcgcgggac
gagatcgcgcgcgccatccgcgaccaccaggtcgtgatcgtggccggggcgacgggctcg
ggcaagaccacgcagctgcccaagatctgcctcgagctcgggcgcacctcgatcgcgcac
acgcagccccgccgcatcgccgcgcgcacgatcgccgagcgcatcgccgaagagatgcag
gtgccgctgggctccaccgtcgggtacaaggtgcgcttcaccgacaaggtgtcggccgac
acgcgcgtcgcgctggtgaccgacggcatcctgctcaacgagatccaccgcgatcgcctt
ctgcgccgctacgacacgatcatcgtcgacgaggcgcacgaacgctcgctgaacatcgac
ttcctgctcgggtacctgcgccgcatcctgccgaagcgccccgacctcaaggtcatcgtc
acctcggccaccatcgaccccgagagcttcgcgcgccacttcgccgctcccccggccgag
cccggcggcgatccggttctcgcgccggtgatcgaagtgtcgggccgcacgtatccggtc
gagatccgctatcgaccggccggtggggccgagatcgtcgagggtgcgggcgaaactcct
gaggatggggatgccgacggcacggacgccgcgtcatcccgccgccgccaggcgtccggc
ccgcagaaagtcaggagttcggcccggcccgccgccaagcccgggcgcgacgacgacgac
gtcgacgaggtcggagccgtggtggcggccctgcgcgaactcgaccgggagtcgtcgggc
gacgtgctcgtgttcttccccggcgaagccgagatccgcgatgcggcggatgccatccgc
ggggcgtaccggaacgacgccgcgcccaccgaggtgctgccgctgtacggacgcctctcc
gccgccgaacagcaccgcgtgttcgagcgttcgagcgtcgccggtgtgcgccgccgcgtc
atcctggccaccaacgtcgccgagacgagcctcaccgttcccggcatccggtacgtcgtc
gacaccggcaccgcgcgcatctcgcgctacagcaaccgctcgaagatccagcgtctgccg
atcgaggccgtctcgcaggcctcggcgcagcagcgctcgggccgcgcgggacgcacctcg
ccgggcatcgcgatccgcctgtattccgaagaggacttcacccggcgtccggagtacacc
gaacccgagatcctgcgcacctccctcgcatccgtcatcctgcagatgctctcgctcggt
ttcggcgacatccaggccttcccgttcctgaccccgcccgattcgcgcggagtcaaggcg
gcgttcgacctgctcgtcgagctcggcgcggtgaagctgcccgcccgcggggagtcggga
acgccccgtctgaccgagatcggccgcgagatctcgcgcctgccgatcgatccccgcttc
gcccgcatgctcatcgaggcgcgccgcaacgacgtgcagtccgaggtgctggcgatcgtg
tcgggcatgtcgatccaagacgtgcgcgagcgccccgaggagcgccgcgacgaggccgac
cggttccacgcacgtttcaccgaccccaccagcgacttcctctcgctgctgaacctgtgg
gagtacctgcaggagaagcaggccgagctcggctcgagcgccttccgacgcctctgccgc
agcgagcacctcaactacgtgcgcgtgcgggagtgggtcgacgttcaccggcagctgcga
tcgctgggcggcgagcgcggctccggcgacggcgggcgcggcggtgagggcgggcgcggg
cgcggcgggcggaaccccgtcccactttcggccgtctcagacccctccaggccgcatgat
tcgggacacggctcgcacgaatcgggacgaggttcgcaacgcggcccccagctcgacgtc
tccgcccccgagggccacgccgccggcgatgccatccaccgcgccatcctctcgggactg
ctgtcgcacctcggcatcctggatccgcgcaccgtcgcgcaggccaaggatcgcaaggca
ccgggagagacccgccccaccaagggcgaatacatcggcgcgcgcggtgcgcgattcgcg
atcttcccgggctccgggctgaagaagcggcgtccgtcggcggtcatggccgccgagctc
gtcgagacctcgcggctgttcgcgcgcacggtcgccgccgtcgacccggcgtgggcggag
gacctcgcccccgacctggtgaagcggtcgctgagcgagccgcactggtcgaaggatgcc
ggggccgccgcggcctacgagaaggtgacgctcttcggggtcgagctcgtcggccggcgc
cgggtgcagctcgcgcgcttcgatcgtccgctcgcgcgcgagatgttcgtgcggcacgcc
ctggtcgagggcgagtgggacccctcggtgctcgataagcggctcaccgcgttcctgcgt
cgcaaccaggaacaacgccgcctgctcgagaagatcgaggagcgcgagcgccgccgcgac
atcctcatcggcgacgaagcggtcttcgcgttctacaactcgcggatccccgccgacgtc
agcgacgtgcgctcgttcgaggcctggtggaaagacgcctccaaccgcacgccgcacctg
ctcgaccttcgcgaatccgacctcaccggcgaccgcgcgcagggcgatgaccgggccttc
cccgcccggtggcagcagggcgaccagacgctgaacctcgcctaccgtttcgaacccggc
gcccccgacgacggcgtgacggtcgtcgtccccctgccgttgctcgcgcagctacggccc
gacggcttcgactggcaggtgccgggcatgcgcgacgagctcgtcacggcgctgctgcgc
gccctgcccaagaccatccgccgcaacgtcgtgcccgccgccgactgggccgagaagttc
agcgccgagctggcggagaaggggcccgagcaggccaacggcctgccccgcaccacgctc
gtcgactcgctcgccgcccttgtgcagcgcgtcgccaaccagcgcgtgagcgccgccgat
ttcgagctcgagcgcgtccccggtcacctgatggtgtcgttccgcgcggtcgacacccgc
ggccgcgcgatcggcagcgaccgggacctcggcgccctgcagcgccgcctggccgacaag
gctcgctcgagcgtcgagtcgaccatcgcgcgcccttcgacccgcgcgtcggcacgcgtc
gccgaggcctcgcccgcgttcgcctcgcgcgcgaagctcacgacctgggacctcgacgag
ctgaccgaggtcgtcgacaccccggtcgccggcggcgtcgtgcgcggctacccggctctc
gtcgacgagggcgacagcgtggcgctccgcgtcgaggcgacccccgaggacgccgcgcgg
aacacccgcgccggcatccgccggttgatgctgctcgccgtgccctcccccgcgacgtac
gttctcgatcacctcaccgcgaacgagaagctcgcgctcgcggcatccccgtaccagaac
gcgaaagcgttgatcgaggatgcgcgcgtggccctggccgacgacatcctgcggcgcgag
accccctcgggcctggtgcgcacccgggccgacttcgagcgggtgcgcgacgcgttctcg
gcggcgtcggtggaccgtacgttccagacggtctcgctcgcagcgaagatcctgctcggc
cagcgcgaggtggagcgggcgatgaaggatgccgcgtccatcaccctgctcggagccctc
aacgacgtgcgggggcagctgaagggcctgctgttctcggggttcctctcgcgcgcgggc
ctgccccggctgcagcactacccgcgctacctcgcgggtgctctcgaccgggtgaagacc
ctgtcggacaaccccggccgcgaccgccagcgcatgaccgagtacgagcggaccgccgcc
ggcttcgtcgaggcggggggtgccatgcccctcccggcggacgcgccggcgaacctcgtt
cagacccgctggctgctcgaggagctgcgcgtgagtctcttcgcccagcgcctcggcacg
gccgagcccgtgtcgccccagcgcatcgccaaagccctgaagtcctag
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