Microbulbifer sp. A4B17: BTJ40_04375
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Entry
BTJ40_04375 CDS
T05421
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mii
Microbulbifer sp. A4B17
Pathway
mii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTJ40_04375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mii03019
]
BTJ40_04375
03009 Ribosome biogenesis [BR:
mii03009
]
BTJ40_04375
Enzymes [BR:
mii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BTJ40_04375
Messenger RNA biogenesis [BR:
mii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BTJ40_04375
Ribosome biogenesis [BR:
mii03009
]
Prokaryotic type
rRNA helicases
BTJ40_04375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
AAA_22
Cas3-like_C_2
Flavi_DEAD
IPP-2
Motif
Other DBs
NCBI-ProteinID:
AWF80113
LinkDB
All DBs
Position
965865..967631
Genome browser
AA seq
588 aa
AA seq
DB search
MTDTPKAAGFDQLGLPSEILSAIEKLGYETPSPIQAQTIPSLLEGRDVLGQAQTGTGKTA
AFALPLLSQLDLNDRRPQALVLAPTRELAIQVAEACQSYASKLKGFHVAPIYGGADYRGQ
IQQLKRGVQLVVGTPGRVMDHMRRGSLDLSNLRTLVLDEADEMLRMGFIDDVQWVLEQIP
EERQIALFSATMPKEIARIAREHLDEPVEVKIRVKTETAETIRQRYWPVGGLHKLDALTR
ILEAEPVDATIIFVRTKNSTVELADKLAARGFASAALNGDMAQNLREAVIDKLKNGKLDI
VVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLR
VIEKATKKPIEKLDLPSADAVNSARMQRFRERITATLEGQTDLAPYRQLVEEFLAQNEVD
PLDVAAALAAMAQGDQPLLIQEKEQRPRKERRERDDDFDGGRRRKKESFEKDRKLPPPDE
GLERFRIEIGREQGVRPGSIVGAIANEVDLDSSYIGRIEIYNDFTTVDLPQGMPKEVFQH
LKKVRVSGKPMKITRFDEAAVKSKGKPKGKPKFKPKGKPKGKRGNNDE
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatacccctaaagcggccggcttcgaccagttgggtctgccgtctgaaattctc
agcgccatcgaaaagctcggctatgagactccctccccgatccaggcacaaactattccg
tccctgctggaggggcgggatgtgctaggccaggcccagaccggcactggcaagaccgca
gcctttgcgctgccgctactctcccagctggacctgaacgatcgtcgtccccaggcactg
gtgctggcaccgacccgcgagctggctattcaggtggctgaagcctgccagtcttacgca
tccaagttgaaaggtttccacgttgcgcctatctacggtggtgctgactaccgtggccag
atacagcagttgaagcgtggcgttcagctggtggtaggtactcccggacgggtgatggac
catatgcgtcgcggctccctggatctgtccaatctgcgcaccctggtgttggatgaagcg
gatgaaatgctgcgcatgggctttatcgatgatgtgcagtgggtattggagcagattcct
gaagagcgccagattgcgctgttctccgccactatgccaaaagagattgcccgcatcgcc
cgcgagcatctggatgagccggttgaagtaaaaatccgtgttaagaccgagactgcggaa
accattcgccagcgctactggccggttggcggcctgcacaaactggatgcactgacccgt
attcttgaagcggagccggtggacgccacgattatcttcgtgcgcaccaaaaacagcact
gtggaactggcagataagctggccgccagaggctttgccagtgccgccctgaacggtgat
atggcgcagaacctgcgtgaagccgtgatcgacaagctgaaaaatggcaagctcgatatt
gttgtagccaccgatgttgcggctcgtggactggatgtgaagcgtatcagccacgtgatc
aattacgacatcccctacgataccgaagcttatattcaccgtatcggtcgtaccggccgc
gccggtcgcgagggcgatgcgatcctgtttgtggcgccccgcgagcgccgtatgttacgg
gttatcgagaaagcgaccaagaagccgatcgaaaaactcgatttgcccagcgcagatgca
gtgaacagcgcccgtatgcagcgcttccgcgagcgcattaccgcgaccctggaaggccaa
actgatctggcgccctatcgccagctggttgaggaattcctggcgcagaatgaagttgac
cctctggatgttgccgccgcgctggctgcaatggcccaaggtgatcagcccctgctgatt
caagagaaagagcagaggccgcgcaaagagcgtcgcgagcgcgatgatgactttgacggt
ggccgtcgccgcaagaaggaaagcttcgagaaagatcgcaagctgccgccgcccgatgag
gggctggagcgcttccgtatcgagatcggccgcgagcagggcgtgcgccccggcagcatt
gttggcgctattgccaatgaggtggatctggacagctcctatatcggccgtatcgaaatc
tacaacgatttcaccacggtagatctgccccagggaatgccgaaagaagtgttccaacac
ctgaagaaggtgcgtgtttccggtaagccgatgaaaatcacccgcttcgatgaagcggcg
gtgaaatcgaaagggaagcccaagggtaagcctaagttcaagcccaaaggtaagcctaaa
ggtaagcgcggcaataacgacgagtaa
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