Mycolicibacterium insubricum: MINS_39220
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Entry
MINS_39220 CDS
T06933
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mij
Mycolicibacterium insubricum
Pathway
mij03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MINS_39220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mij03400
]
MINS_39220 (mfd)
Enzymes [BR:
mij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MINS_39220 (mfd)
DNA repair and recombination proteins [BR:
mij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MINS_39220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
BBZ68493
LinkDB
All DBs
Position
complement(4152578..4156255)
Genome browser
AA seq
1225 aa
AA seq
DB search
MTAPGTVHAQTPIAGLVDLALAAPTLRDLTERAADGPATLDLVGPPAARVFVTAALARGG
PLLVVTATGREAEDLTAELRGVFGDAAALFPSWETLPHERLSPAVDTVGTRLHLLRRLAH
PDDDRLGPPLQVVVTTARSLLQPMAGGDGAAVDAEPVTLAVGAEADFDDVITRLVELAYT
RVDMVGKRGEFAVRGGILDIFAPTAEHPVRLEFWGDEVSEMRMFAVADQRSIPEIAVEHL
VAMPCRELLVTDAVREQAAQLAGATPATDNTVVGTVGEMLAKVAEGIPVDGMESLAPVLW
TGQPRLLTDHLPAGAPVLICDPEKVRSRAADLIKTGQEFLEASWSVAALGGAAPVDIEAL
GGSGFRTLDEVRAGAGEHPWWTLSQLSNETAVQIDARPAPNTRGAQQSIDEVFAMLRAHI
ATGGVAAIVAPGSGTAARVVEQLGEADVAATLLEPGARPQPGVVGVLKGPLHSGLILPGA
DLVVITETDLTGNRVTEVAGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGKFIEMTERAV
GGARREYLVLEYASAKRGGGTDKLYVPMDSLDQLSRYVGGATPTLSRLGGSDWANTKTKA
RKAVREIATELVALYAKRQAAPGHAFGPDTPWQAEMEDAFGFTETVDQLTAITEVKSDME
KSVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMTGFP
VTVKGLSRFTDGSESKAVVAGLADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKSLRSNVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQ
VAAALRRELLRDGQAFYIHNRVRSIDEAAARIRALVPEARVVVAHGQMPEEQLERTVEGF
WNREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP
PEQPLTETAHDRLATIAQNNDLGAGMSVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVR
LVGEAVEAYRAAADGQPITATETKEVRIDLPIDAQLPPDYIGSDRLRLEGYRRLASAADD
DAVARVVDELTDRYGPLPEPARRLVAVARLRLLCRRYGVTEVSATGSAGQPSTLRLAPLP
LVDSQQMRLARVYPGANYRPTTATVQVPIPRAGSGIGAPRIRDVALAQAVADLLLVLDGQ
PQGEFDITDLATAMPTRTTNDGGTA
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggaccgtccatgcccaaaccccgattgcggggctcgtcgacctggcg
ctggccgcgccgacgctgcgcgatctgaccgaacgcgccgccgacggcccggccaccctg
gacctggtcggcccgcccgccgcgcgggtgttcgtgaccgccgcgctggcccgcggcggc
ccgctgctggtggtcaccgccaccggccgggaggccgaggacctgaccgccgagctgcgc
ggggtgttcggcgatgccgccgccctgttcccgtcctgggagaccctgccgcacgaacgg
ctgtccccggctgtggacaccgtcggcacccggctgcacctgctgcgccggctggcccac
cccgacgacgaccggctcggcccgccgctgcaggtggtggtcaccaccgcgcgctcgctg
ctgcaaccgatggccggtggcgacggtgcggccgtcgacgccgaaccggtcaccctggcc
gtcggcgccgaggccgacttcgacgacgtgatcacccggctcgtcgagctcgcctacacc
cgcgtcgacatggtcggcaagcgcggcgaattcgcggtccgcggcggcattctcgacatc
ttcgcgcccaccgccgagcacccggtccggctggagttctggggcgacgaggtttccgag
atgcggatgttcgccgtcgccgatcagcggtccatcccggagatcgccgtcgagcacctg
gtcgcgatgccgtgccgggaactgctggtcaccgacgccgtccgcgagcaggccgcccag
ttggccggtgccaccccggccaccgacaacaccgtggtcggcacggtcggggagatgctg
gccaaggtggccgagggtatcccggtcgacggcatggaatccctggcgccggtgctgtgg
accggacagccgcggctgctgaccgatcacctgcccgccggggcgccggtgctgatctgc
gatccggagaaggtgcgctcgcgcgcggccgacctgatcaagacaggccaggaattcctg
gaggcctcctggtcggtggccgccctcggcggcgccgcgcccgtcgacatcgaggcactc
ggcggttcgggcttccgcaccctcgacgaggtgcgcgcgggcgccggggagcacccgtgg
tggacgctgagccagctgtccaacgagaccgccgtgcagatcgacgcccgcccagcgccg
aacacccggggtgcccagcagagcatcgacgaggtgttcgccatgctgcgcgcccacatc
gccaccggcggggtggcggcgatcgtcgcacccggatccggcaccgcggcaagggttgtc
gagcagctcggcgaggccgacgtcgcggccacactgttggagcccggcgcccggccccag
cccggcgtggtcggcgtgctcaagggtccgctgcattccgggctgatcttgcccggcgcc
gatctagtggtgatcaccgagacggatttgaccggcaaccgggtcaccgaggtcgccggc
aagcggctggcggccaagcgccgcaacaccgttgacccgctggccctgaccgcgggcgac
ctcgtcgtgcacgatcaacacggcatcggcaagttcatcgagatgaccgagcgcgcagtc
ggcggcgcgcgtcgggagtacctggtgctcgagtacgccagcgccaagcgcggcggcggc
accgacaagctctacgtaccgatggactccctcgaccagctgtcccgctacgtaggcggc
gccacgccgacgctcagccggctcggcggcagcgactgggcgaacacgaaaaccaaggcc
cgcaaggccgttcgggagatcgctaccgaactcgtggcgctctacgccaaacgccaggcc
gcacccggacacgcgttcggcccggacaccccgtggcaggccgagatggaggacgccttc
ggattcaccgagaccgtcgaccagctgaccgccatcaccgaggtcaagtcggacatggag
aagtcggtcccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatc
gcggtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtcgccgtgctggtgccc
accaccctgctcgccgaccagcacctgcagacgttcaccgcgcggatgaccggcttcccg
gtcaccgtcaaggggctgtcccggttcaccgacgggagcgaatccaaggccgtcgttgcg
ggtttggccgacggcagcgtcgacatcgtgatcggcacgcaccggctgctgcagaccgga
gtgcgctggaaggacctcgggctggtgatcgtcgacgaggagcagcgcttcggcgttgag
cacaaggaacacatcaagagcctgcgcagcaacgtcgacgtgctcaccatgagcgccacc
ccgatcccgcgcacactggagatgagcctggccgggatccgggagatgtcgaccatcctc
accccgcccgaggagcgctacccggtgctcacctacgtcggcccgcacgacgacaaacag
gtcgccgccgcgctgcgccgtgagttgctgcgcgacggccaggcgttctacatccacaac
cgggtccgctccatcgacgaggccgccgcccgcatccgcgcgctggtgccggaggccaga
gtcgttgtcgcgcacggccagatgcccgaggaacagctggagcgcaccgtcgaaggcttc
tggaaccgcgaattcgacatcctggtgtgcaccaccatcgtggagaccggcctggacatc
tccaacgccaacacgctgatcgtcgagcgggccgacaccttcggcctgtcgcagctgcac
cagctgcgcggccgggtcggccggtcccgggaacgcggctacgcctacttcctgtatccg
ccggagcagccgctgaccgagaccgcgcatgaccgcctggccaccatcgcgcagaacaac
gaccttggtgccggcatgtcggtggcgctgaaggacctggagatccgcggcgccggaaac
gttctgggcgtcgagcagtccggccacgtggccggcgtgggtttcgacctctacgtgcgg
ctggtcggcgaggccgtcgaggcctaccgcgcggcggccgacgggcagccgatcaccgcc
accgagaccaaagaggtgcgcatcgacctgcccatcgatgcgcaactgccgccggactac
atcggcagcgaccggctgcggctggagggctaccgccggctcgcctcggcggccgacgac
gacgcggtggcccgggtggtcgacgagctcaccgaccgctacggcccgctgcccgaaccc
gcgcgacggttggtcgcggtggcccggctgcggctgctgtgccggcgttacggggtgacc
gaggtgtcggccaccggatccgccggccaaccctccaccctgcggttggcgccgttgccg
ctggtggactcccagcagatgcggctggcacgggtctacccgggggccaactaccggccc
accaccgcgacggtgcaggtgccgataccgcgcgccggcagtggtatcggggcgccgcgc
atccgcgacgtcgccctggcccaggccgtcgccgatctgctactggtgctcgacgggcaa
ccccagggagaattcgacatcaccgacctggccaccgcgatgccgacgcggaccacgaat
gacggggggacggcatga
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