Micromonospora sp. L5: ML5_0627
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Entry
ML5_0627 CDS
T01379
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mil
Micromonospora sp. L5
Pathway
mil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ML5_0627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mil03021
]
ML5_0627
03400 DNA repair and recombination proteins [BR:
mil03400
]
ML5_0627
Enzymes [BR:
mil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ML5_0627
Transcription machinery [BR:
mil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ML5_0627
DNA repair and recombination proteins [BR:
mil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ML5_0627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ADU06177
LinkDB
All DBs
Position
complement(635304..639191)
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAEARHRDLSTIENEILAEKRQAENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL
YRELRDRFGEYFTGSMGAEAIKALVQNMDLEAEAENLRETIRSGKGQRKIRALKRLKVVA
AFQNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTPGGKGEGR
AFSSDAEARMAYDNGELHLQTPVRIRLRDVVGVDNGAGAEPWTAPEGWTEGEPVTVETTL
GRVLFNETLPPGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVIAPPRKREILERYEKEADRIDKQYQRGLMTAEERRGELIEIWTKATNEVAKE
MDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQVGERIDGK
LVVHEHAETSVHARTLADDIKGPDGTVVAHRGQDINSILVDAIVAAGTETVRVRSVLTCE
SKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVQEIFEARVPKGKAPIADTPGRIRIEDGERSRKIVVIPDDGSDEIVYDKISKRVRLRA
HDGDHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVGEGGEPAAGRPVLMGITKASLATDS
WLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRNVRVEPTEEAK
AKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcgcatcggcctcgccaccgctgacgacatc
cgtcagtggtcccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgcagcgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctccaaggttcgccgggagcggatgggtcacatcgagctggccgctccg
gtgacccacatctggtacttcaagggcgtgccgagccggctgggctacctgctggacctc
gccccgaaggacctcgagaagatcatctacttcgcctcgtacgtcgtgacgagcgtggac
gccgaagcgcgtcaccgcgacctctcgaccatcgagaacgagatcctggccgagaagcgg
caggccgagaacagccgcgactcggagatcgagaagcgggccgccaagctggaggccgac
ctggccgagctggaggccgagggcgcgaaggcggacgtccggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcccagcgcgagatcgaccgcctcgac
gaggtcctcgacaccttccgcaagctggagccgaagcagctggtcaccgacgagctgctc
taccgcgagctgcgcgaccgcttcggtgagtacttcaccggcagcatgggcgccgaggcg
atcaaggccctggtccagaacatggacctggaggccgaggcggagaacctgcgcgagacc
atccgctccggcaagggccagcggaagatccgtgcgctcaagcggctcaaggtcgtcgcg
gccttccagaacacccgcaactcgccgctcggcatggtgctggactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccggcgtgtgatcaaccggaacaaccgcctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgtggccgtccggtcaccggcccgggtaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgaagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggcagcgg
ccggtcgtgtgggacgtgctggaagaggtcatcggcgagcacccggttctgctgaaccgc
gcgccgaccctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgccgacttcgacggtgaccag
atggcggtccacgtgccgctgtccgccgaggcccaggccgaggcgcggatcctgatgctg
tcgtcgaacaacatcctcaagccggccgacggcaagccggtcaccatgccgacccaggac
atggtcatcggtctgtaccacctcacccacctcaccccgggtggcaagggcgagggccgg
gcgttcagctcggacgccgaggcgcggatggcgtacgacaacggcgagctgcacctgcag
acgccggtccggatccggctgcgtgacgtggtcggtgtggacaacggcgccggcgccgag
ccgtggaccgcccccgagggctggaccgagggcgagccggtgaccgtggagaccacgctg
ggccgggtcctgttcaacgagacgctgcccccgggctaccgcttcgtgaactacgagatc
cgcaagggccagctctccgcgatcgtcaacgacctcgccgagcgcttcccgaaggtggcc
ctggcggccaccctggacgggctcaaggaggccggtttccactgggccacctggtccggc
gtcaccatcggcatggaggacgtcatcgctccgccgcgcaagcgggagatcctggagcgg
tacgagaaggaagccgaccggatcgacaagcagtaccagcgtggtctgatgaccgccgag
gagcgccgcggcgagctcatcgagatctggaccaaggcgaccaacgaggtcgccaaggag
atggacaccgcgctgccgcaggagaacccgctgtggaagatgatcaactcgggtgcccgc
ggtaacctgctccagctccggcagatcgcggcgatccgtggtctggtggccaacccgaag
ggcgagatcatcccgcggccgatcaaggccagctaccgggagggtctgtccgtgctggag
tacttcatctccacgcacggtgcccgcaagggtctcgcggacaccgccctgcgtaccgcc
gactcgggttacctgacccggcgtctggtggacgtctcgcaggacgtcatcatccgcgag
gaggactgtggcaccgaccgcgccatcccgatgcaggtcggtgagcgcatcgacggcaag
ctggtcgtgcacgagcacgccgagaccagcgtgcacgcccggacgctcgccgacgacatc
aaggggccggacggcaccgtggtggcccaccgcggccaggacatcaactcgatcctggtg
gacgcgatcgtcgccgccgggaccgagacggtgcgggtgcgcagcgtgctcacctgcgag
tcgaagctgggcgtctgcggtgcgtgctacggccgctcgctgccgaccggcaagaccgtg
gacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagccgggtacgcag
ctgacgatgcgtaccttccacaccggtggtgtcgcgggtgaggacatcacccagggtctg
ccccgtgtccaggagatcttcgaggcccgggtgccgaagggtaaggcgcccatcgccgac
accccgggtcgcatccggatcgaggacggcgagcggtcccgcaagatcgtggtcatcccg
gacgacggcagcgacgagatcgtgtacgacaagatctcgaagcgggtccggctccgggcg
cacgacggcgaccacgtcgaggtcggcgagaagctcaccgagggcaccatcgacccgcac
gagctgctgcgcatcctcggcccgcgcgcggtccaggtccacctgacccaggaggtccag
gaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatccgc
cagatgctcaagcgggtgactgtgatcgactccggctcgaccgagttcctgccgggcgtg
ctggtcgaccgggcgctgttcgagtcggagaaccgccggctcgtcggcgagggtggcgag
cccgccgccggtcgcccggtgctgatgggtatcaccaaggcctcgctggccactgactcc
tggctgtcggcggcctccttccaggagaccacccgggtgctgacggacgcggcgatccac
gcccgcagcgactcgctgatcggcctcaaggagaacgtgatcatcggtaagctcatcccg
gccggtacgggcatcagcaagtaccgcaacgtccgggtcgagccgaccgaggaggcgaag
gccaaggtctactcgatgaccggctacccggagaccgactacggcttcgggccggccagc
ggccaggcggttccgctggacgacttcgacttcgggtcgtaccgctaa
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