Micromonospora sp. L5: ML5_3410
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Entry
ML5_3410 CDS
T01379
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mil
Micromonospora sp. L5
Pathway
mil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ML5_3410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mil03019
]
ML5_3410
03009 Ribosome biogenesis [BR:
mil03009
]
ML5_3410
Enzymes [BR:
mil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ML5_3410
Messenger RNA biogenesis [BR:
mil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ML5_3410
Ribosome biogenesis [BR:
mil03009
]
Prokaryotic type
rRNA processing factors
ML5_3410
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
FakA-like_C
Herpes_U5
Motif
Other DBs
NCBI-ProteinID:
ADU08924
LinkDB
All DBs
Position
3590068..3593337
Genome browser
AA seq
1089 aa
AA seq
DB search
MLENEPEGGERTGAEPAGTTADSATTASGSAASATSAGAGGATTEGTVEGVAETKPPARK
RASRRKAAPLNQPEQTDAPVEASTTVTGSGESPQAEVLAPVAGELDTAPKTTRRRRKATP
AKAVEEPVAAAGVEAASEEVVPPVKVTRTRRRKATPAAETVAPDETAAAGQAPADGVIDG
PVSAPGGDLIAEGRADIDGGETAAPGEAVTAGTAAETAPQAPTGRRRATTSRTKAAGAGK
ASTGGIGETTGEDVEDAEAEAVADASAAAARTEEVNLARSGGPADATGVVSTGAAVPRAA
EEPAETPPATSRRRRAALSAPTVLFMAPQPDEAPAVQVTYPAAEEPIEEAVETGRRRRRG
RREVEPVEAEVEPEVAEEELAAEAEETAEGDEDDETAAGRRRRRRGRRGRGRGKGGADEA
DDEDVEEPAAAEAEGEAEEPAEDEEAEGEGMTRRRRRRRRRGAGEADTAAEDGVPTVVKI
REPRKPVDEVQGVSGSTRLEAKRQRRRDGREQRRTRPPILSESEFLARREAVDRVMVVRQ
RGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLY
AGEVNWDATGLEGRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPN
GNASGISRKLPDTERKRLRDVLKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDI
QAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDLVAR
LRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGKYTGSGGN
LEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKH
QVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPVPEKPRGGAGEKVKAV
ASAVAAPAEEKGRRRGRKAAAEKPAVEAAPEQPSAQPQAVTEAPAAPERTVAEVVETDDD
YYDTQGYDLSRFETDTPAAPAIADSQEGDSARLAAADDPDAIGDGDNDDDSGAPRRRARR
GGARRRTRP
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaacgagcccgagggcggcgaacggaccggcgcagagccggccgggacgacc
gccgacagcgccaccaccgcctccggcagcgccgcgagcgcgacctctgccggcgccggg
ggagccaccacggaaggcaccgtggagggcgtcgcggagaccaagccgcccgcccgtaag
cgggccagccgccgcaaggccgctccgctgaaccagccggagcagaccgacgcgccggtc
gaggcgtccaccacggtgaccggcagcggcgagtcgccgcaggccgaggtgctcgcgccg
gtggccggtgagttggacaccgcgccgaagaccacccggcggcgtcgtaaggcgacgccg
gcgaaggcggtcgaggagccggtggccgcggccggtgtggaggccgcctcggaggaggtc
gtgccgccggtcaaggtgacccggacccgccgtcgcaaggccacgccggctgccgagacc
gtcgcgccggacgagaccgccgccgcggggcaggcgcccgcggacggcgtgatcgacgga
ccggtctccgcgcccggtggcgacctgatcgccgagggacgcgccgacatcgacggcggc
gagaccgccgcaccgggcgaggccgtcaccgcgggtaccgccgccgagactgcaccgcag
gcccccaccggccggcgcagggccaccaccagcaggaccaaggccgccggcgccggcaag
gcgagcaccggcggcatcggtgagaccactggcgaggacgtcgaggacgccgaggccgag
gccgtggcagacgcgagcgccgcggctgcgcgtaccgaagaggtgaacctggcccgcagc
ggcggcccggccgacgcgacgggcgtcgtgtcgacgggtgccgccgtgccgcgcgcggcc
gaggagccggccgagacgccgccggccaccagccgccggcgtcgtgccgcgctctccgcg
ccgaccgtcctgttcatggcgccgcagcccgacgaggcgccggccgtccaggtgacgtac
ccggccgccgaggagccgatcgaggaagcggtcgagaccggccggcgccgccgtcgcggc
cgccgtgaggtcgagccggtcgaggccgaggtcgagccggaggtcgccgaggaggagctc
gccgccgaggccgaggagaccgccgagggggacgaggacgacgagacggccgcgggccgg
cgtcgccgccgccggggccgccggggtcgtggccggggcaagggcggcgcggacgaggcc
gacgacgaggacgtcgaggagcccgccgcggccgaggccgagggtgaggccgaggagccg
gcggaggacgaggaggccgagggcgaggggatgacccgtcgccgtcgccgtcgtcgccgc
cggggcgccggcgaggcggacaccgccgccgaggacggcgtgccgaccgtcgtcaagatc
cgtgagccgcgcaagccggtcgacgaggtgcagggtgtctccggctcgacccggctggag
gccaagcggcaacgtcggcgggacggccgcgagcagcggcgtacgcgcccgccgatcctg
agcgagtcggagttcctggcccgccgcgaggcggtggaccgggtgatggtggtccgccag
cgcggcgaccgcacccagattgcggtgctcgaggacggcgtgctcgtggagcactacgtc
acgcggaactcgtccggcacgatggccggaaacgtctacctgggcaaggtccagaacgtc
ctgccgagcatggaggcggccttcgtcgacatcgggcgcgggcgcaacgcggtcctgtac
gccggtgaggtcaactgggacgccaccggcctggagggccgggcccgctcgatcgagcag
gcgctgcgctccggcgactcggtgctggtgcaggtgaccaaggacccgatcgggcacaag
ggcgcgcggctgaccagccacatcgcgctctccggccggcacctggtctacgtgcccaac
ggcaacgcctccgggatcagccgcaagctgcccgacaccgagcgcaagcggctgcgggac
gtgctgaagaagctggtgccggacggcgccggggtgatcgtccggaccgcggccgagggc
gccagcgaggacgagctggcgcgcgacgtcaagcggctccaggcgcagtgggaggacatc
caggccaaggcgaccgagggcggcgctccggtgctgctctacgaggagccggacctggtc
atccgcgtggtccgggacctcttcaacgaggacttccgcgagttggtcatcgagggcgag
cccgcgtacgacctggtcgagtcgtacctgtcgcacgtgtcgccggacctggtggcgcgg
ctgcgccggcacgccggggtggcggacgtgttcgccgagtaccggatcgacgagcagatc
ctcaaggggctggaccgcaaggtcttcctcccctcgggcggctcgctggtgatcgaccgc
accgaggcgatgactgtcgtcgacgtcaacaccggcaagtacaccggctccgggggcaac
ctggaggagacggtcacccgcaacaacctggaggcggccgaggagatcgtgcgccagctg
cggctgcgcgacctcggcggcatcgtggtgatcgacttcatcgacatggtgctggagtcg
aaccgggagctggtgctgcgccggctcaccgagtgcctcggccgggaccgtacgaagcac
caggtcaccgagatcacctcgctcggcctggtgcagatgacccgtaagcgcatcggcgcg
ggcctgctggaggcgttcagcgagacctgcgagtgctgcaagggccggggcgtgatcatc
cacaccgagccggtgccggagaagccgcgcggcggggcgggggagaaggtcaaggcggtc
gcctcggcggtcgccgcgccggccgaggagaagggccgccgccggggccgcaaggccgcc
gcggagaagcccgcggtggaggccgcgccggagcagccctccgcgcagccgcaggcagtc
accgaggcgccggccgccccggagcggaccgtcgccgaggtggtcgagaccgacgacgac
tactacgacacccagggctacgacctgtcccggttcgagacggacacgcccgccgccccg
gcgatcgcggacagccaggagggcgactcggcccggctggccgccgccgacgacccggac
gcgatcggtgacggagacaacgacgacgacagcggcgccccgcgccggcgggcgcgccgt
ggtggtgcccggcggcgtacgcggccgtga
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