Micromonospora sp. L5: ML5_3962
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Entry
ML5_3962 CDS
T01379
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mil
Micromonospora sp. L5
Pathway
mil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ML5_3962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mil03019
]
ML5_3962
03400 DNA repair and recombination proteins [BR:
mil03400
]
ML5_3962
Enzymes [BR:
mil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ML5_3962
Messenger RNA biogenesis [BR:
mil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ML5_3962
DNA repair and recombination proteins [BR:
mil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ML5_3962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ADU09473
LinkDB
All DBs
Position
complement(4180629..4182482)
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AA seq
617 aa
AA seq
DB search
MVSPTDERTTSPPAGDALDVLRRVFGYDAFRGFQQEVVEHVVTGGDALVLMPTGGGKSLC
YQIPALVRDGVAVVVSPLIALMQDQVDALTAVGVRAGFLNSTQDPAQRRRVEAAYLAGEL
DLLYLAPEGLAVRSTLGLLERGRVALFAIDEAHCVSQWGHDFRPDYLNLSMLHERWPDVP
RIALTATATQATRTEIATRLRLTEARHFVASFDRPNIQYRIVPKREPRRQLLSLLRDEHS
GDAGIVYCLSRASVEKTAEFLVANGIPALLYHAGLDASTRAANQQRFLREDGLVMVATIA
FGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRKMIETS
EGDLAHRRNLAAHLDAMLALCETVRCRRSQLLEYFGETGVADCGNCDTCLEPPESWDGTV
AAQKLLSTVFRLDRERNQRFGAGHSIDILLGKHTDKIDQYGHDALSTFGIGTELREAEWR
GVVRQLLAEGLLAVEGDYGTLALTEASADVLGRRRTVTLRKEPERPASRSAKPRGAATVV
ADLSPAAAPVFERLRAWRAATAKEQGVPAYVIFHDATLRQIAAEPPTSLAELSRFNGVGE
NKLAKYGEAILAVLAES
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggtctcccccaccgacgagcggaccacctccccaccggccggcgacgcgctcgacgtg
ttgcgccgggtcttcgggtacgacgccttccgcggcttccagcaggaggtcgtcgagcac
gtggtgacaggcggcgacgcgctggtgctcatgcccaccggtggcggcaagtcgctgtgc
taccagatccccgcgctggtccgcgacggtgtggcggtggtcgtctcgccgctgatcgcg
ctcatgcaggaccaggtcgacgccctgacggcggtcggtgtccgggccgggttcctcaac
tcgacccaggatcccgcgcagcggcgccgggtcgaggcggcctacctcgccggcgagctg
gacctgctctacctcgccccggaagggctcgcggtgcggtccacgctcggcctgctggaa
cgcggccgggtcgcgttgttcgcgatcgacgaggcgcactgcgtctcgcagtgggggcac
gacttccgccccgactacctcaacctgtcgatgctgcacgaacgctggccggacgtgccg
cggatcgcgctgaccgccaccgcgacgcaggcgacccgcaccgagatcgccacccggctg
cggctcaccgaggcccggcacttcgtggccagcttcgaccggcccaacatccagtaccgc
atcgtgcccaagcgggagccgcgccgccagctgctcagcctgctgcgcgacgagcactcc
ggcgacgccggcatcgtctactgcctgtcccgcgcctcggtggagaagaccgccgagttc
ctggtcgccaacggcatccccgcgctgctgtaccacgccgggctggacgcctcgacccgc
gccgccaaccagcagcgtttcctgcgcgaggacggtctggtcatggtcgccaccatcgcc
ttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgcccacctggacctgccgaag
tcggtggagggctactaccaggagaccggccgcgccgggcgcgacgggctgccgtccacg
gcctggctggcgtacggactccaggacgtcgtgcagcagcgcaagatgatcgagacgtcg
gagggcgacctggcgcaccggcgcaacctcgccgcccacctggacgccatgctggcgctc
tgcgagacggtccgctgccgccgctcccaactgctcgaatacttcggcgagaccggcgtg
gccgactgcggcaactgcgacacctgcctcgaaccaccggagtcctgggacggcaccgtc
gccgcgcagaagctgctgtccaccgtcttccggctcgaccgcgagcgcaaccagcggttc
ggcgccgggcacagcatcgacatcctgctcggcaagcacaccgacaagatcgaccagtac
ggccacgacgcgctcagcacgttcggcatcggcaccgagctgcgcgaggccgagtggcgt
ggggtggtgcggcaactgctggccgagggtctgctcgcggtcgagggcgactacggcacg
ctggcgctgaccgaggcgagcgcggacgtgctcggccgccgccgtaccgtcacgctgcgc
aaggagccggagcgcccggccagccggtccgccaagccgcggggcgcggccactgtggtc
gccgacctctcccccgccgccgcgcccgtcttcgagcggctccgcgcgtggcgcgcggcc
accgccaaggagcagggcgtcccggcgtacgtcatcttccacgacgcgaccctgcggcag
atcgccgccgagccgcccacctccctcgccgagttgtcccggttcaacggggtcggcgag
aacaagctcgccaagtacggcgaggcgatcctggccgtcctcgccgagtcctga
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