Micromonospora sp. L5: ML5_5008
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Entry
ML5_5008 CDS
T01379
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mil
Micromonospora sp. L5
Brite
KEGG Orthology (KO) [BR:
mil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mil03016
]
ML5_5008
Enzymes [BR:
mil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ML5_5008
Transfer RNA biogenesis [BR:
mil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ML5_5008
Prokaryotic type
tRNA splicing ligases
ML5_5008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADU10481
LinkDB
All DBs
Position
5426139..5427338
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AA seq
399 aa
AA seq
DB search
MGFTSLAGTRAPVRVWTDPYAIEAQAARQLRNIGALPWVQGVAVMPDVHFGKGATVGSVI
AMRQAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLAPLRSAIEAAIPVGFAMRDDAVDPR
RVRGLEQAGWDEFWRRFGTLDRKVAQLQTRAQRQLGTLGGGNHFIEVCLEQGGADDGRVW
LMLHSGSRNIGKELAERHMAVARGLPHNTDLPDRDLAVFLAGTPEMEAYRRDLWWAQEYA
RRNRAVMLALLCQVVREAFPHAGYDEPISCHHNYVAEENYDGVDVLVTRKGAIRAGRGDL
GIIPGSMGTGSYIVRGKGNLDAYCSASHGAGRRMSRGQAKRTYSTADLAAQTAGVECRKD
AGVVDEIPGAYKDITEVMAQQEDLVEVVAHLKQVVCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcacctcgctggccggtacccgggcaccggtccgggtctggaccgacccgtac
gcgatcgaggcgcaggcggcccggcagctgcgcaacatcggcgcgctgccgtgggtgcag
ggcgtcgcggtgatgccggacgtgcacttcggcaagggcgccactgtcggctcggtgatc
gcgatgcggcaggccgtgtcgccggccgcggtcggcgtggacatcggctgcggcatgtcg
gcggtgcggacctcgctgaccgccgccgacctgcccgacgacctcgcgccgctgcggtcg
gcgatcgaggcggcgatcccggtcggcttcgcgatgcgtgacgacgccgtcgatccgcgc
cgggtccgggggctggagcaggcgggctgggacgagttctggcggcggttcgggacgctg
gaccggaaggtggcgcagctccagacgcgggcgcagcggcagctcgggacgctcggcggc
ggcaaccacttcatcgaggtctgcctggagcagggtggcgcggacgacggccgggtctgg
ctgatgctgcactccggttcccgcaacatcggcaaggagctggccgagcggcacatggcg
gtggcgcgcggcctgccgcacaacaccgacctgccggaccgggacctcgcggtgttcctc
gccggcacgcccgagatggaggcgtaccggcgggacctgtggtgggcgcaggagtacgcc
cggcgtaaccgggcggtcatgctcgccctgctctgccaggtggtccgggaggcgttcccg
cacgccggctacgacgagccgatctcctgccaccacaactatgtggcggaggagaactac
gacggggtggacgtgctggtgacccgcaagggcgcgatccgggccggccggggtgacctg
ggcatcatcccgggctcgatgggcaccggctcgtacatcgtgcgcgggaaggggaacctc
gacgcgtactgctcggcgtcgcacggcgccgggcggcggatgtcgcgggggcaggcgaag
cggacgtacagcaccgcggacctggccgcgcagaccgccggggtggagtgccgcaaggac
gccggtgtggtcgacgagatccccggcgcgtacaaggacatcaccgaggtgatggcccag
caggaggacctggtcgaggtggtcgcccacctcaagcaggtcgtctgcgtgaagggttga
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