Microbacterium sp. CGR1: AKG07_00230
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Entry
AKG07_00230 CDS
T04046
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mim
Microbacterium sp. CGR1
Pathway
mim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKG07_00230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mim03019
]
AKG07_00230
03400 DNA repair and recombination proteins [BR:
mim03400
]
AKG07_00230
Enzymes [BR:
mim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AKG07_00230
Messenger RNA biogenesis [BR:
mim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AKG07_00230
DNA repair and recombination proteins [BR:
mim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AKG07_00230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
DUF8096
SWI2_SNF2
Zn_ribbon_TFIIB
KORA
Pribosyltran
HVO_A0261_N
Motif
Other DBs
NCBI-ProteinID:
AKV84975
LinkDB
All DBs
Position
47550..49670
Genome browser
AA seq
706 aa
AA seq
DB search
MTSPASVDTRTAALSALRELVGRPDADFHDGQYEAIEALVEGRRRALVVQRTGWGKSAVY
FVATLLLRRQGAGPTVLVSPLLALMRDQIAAAERAGVRAVAINSTNAHEWSEVMEQLDRD
EVDVLLVSPERLNNPAFREQQLPALVRRIGMLVVDEAHCISDWGHDFRPDYRRLRDLIEQ
MPPEVPVLATTATANSRVVADVAEQLGTGGASDAAGSEVLTIRGPLARTSLRLGVLRLRD
SASRLAWLLSHIDDLPGSGIIYTLTVAAAVDTARLLRDHGHDVRAYTGQTDTDERTESEG
MLKRNEVKALVATSALGMGFDKPDLGFVLHLGAPSSPVAYYQQVGRAGRASESADVLLLP
GVEDRDIWHYFATASMPDRERAERLIAALGDQPISTPALEAMVDIRRTPLELLLKVLDVD
GAVRRVQGGWVATGQPWAYDAERYERIAAERRAEQQHMIDYEQTDGCRMEFLQRSLDDDT
AAPCGRCDNCAGIWFPSEIGESATTQAAESLDRVGVPVEPRRAWPTGADKLDVPVKGRIP
AGEQAGEGRALARLTDLGWGGTLRELFAAGTPDAVVTPQVLGGCVRVLADWGWAERPVAV
VAMPSRSHPLLVDSLARGIAEIGRLPYLGALDLVNGGPTGQPGGNSVFRLAGLWDRFSAQ
GLDVPTGPVLLVDDLADSRWTLTVAARTLRQAGASDVLPFVLALRG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgacttctcccgcctctgtcgacacccgcaccgctgcgctctcggctctgcgcgagctg
gtcggccgcccggacgccgacttccacgacggtcagtacgaggcgatcgaggctctggtc
gaggggcgccgccgcgcgctcgtcgtgcagcgcaccgggtggggcaagtcggctgtgtac
ttcgtcgcgacgctgctgctgcgccgccagggggcagggccgaccgtcctcgtctcgccg
cttctcgcgctgatgcgcgatcagatcgccgcggccgagcgggcaggcgttcgagcggtg
gcgatcaactcgaccaatgcgcacgagtggtcggaggtcatggagcagctcgaccgagac
gaggtcgatgtgctgctcgtctctcccgaacgactcaacaatcccgcgttccgcgagcag
cagctgccggcgctggttcgacggatcggcatgctggtggtcgacgaggcgcactgcatc
agcgactgggggcacgacttccgccccgattaccggcggctgcgcgacctcatcgagcag
atgccgcccgaggtgcccgtgctcgcgacgacggcgaccgcgaacagcagggtcgtggcc
gacgtcgccgagcagctcggcacgggaggggcgtcggatgccgccggctccgaggtgctc
acgatccgcggcccgctcgcgcgcacctcgctgcgtctcggcgtcctgcgtctgcgcgac
tccgccagccggctcgcgtggctgctcagtcatatcgacgacctgcccggttcgggcatc
atctacaccctgacggtcgcggccgcggtcgacaccgcccggctgctgcgcgatcacggg
cacgacgtgcgcgcgtacaccggacagaccgacaccgacgagcgcaccgagtcggaaggg
atgctgaagcgcaacgaggtcaaggccctcgtcgccacgagcgcgctcgggatgggcttc
gacaagccggacctcggtttcgtgctgcacctcggcgcgccgtcgtcgccggtcgcgtac
taccagcaggtcggccgtgccggtcgtgcgagcgagagcgccgacgtgctcctgctgccc
ggcgtcgaagaccgcgacatctggcactacttcgcgaccgcgtcgatgccggatcgggag
cgcgccgagcggctgatcgccgccctcggcgatcagcccatctcgacgcccgcgctcgag
gcgatggtcgacatccggcgtactccgctcgaactgctgctcaaggttctcgacgtcgac
ggcgcggtgcgccgggtgcagggcgggtgggtcgcgacggggcagccgtgggcctacgac
gccgagcgctatgagcgcatcgcggccgagcgtcgcgccgagcagcagcacatgatcgac
tacgagcagaccgacggatgccgcatggaattcctccagcgctcactcgacgacgacacg
gctgcgccctgcgggagatgcgacaactgcgccggcatctggttcccgagtgagatcggc
gaatcggcgacgacgcaggccgcggaatcgctcgatcgcgtcggtgtcccggtcgagcct
cgccgcgcctggccgaccggagccgacaagctcgacgtgccggtgaaggggcgcatcccc
gcgggggagcaggccggagaagggcgcgcactcgcccgtctcaccgacctcggctggggc
ggcacgctgcgcgagctcttcgcggcgggcacccctgacgcggtggtgacgccccaggtt
ctcggcggctgcgtgcgcgtgctcgccgactgggggtgggccgagcgccccgtcgcggtc
gtcgccatgccgtcgcgatcgcatccgctgctcgtcgactcgctcgcccgcgggatcgcc
gagatcggccgcctgccgtatctcggtgcgctcgacctcgtgaacggcgggccgacgggc
caacccggtggcaacagcgtgttccggctggcaggtctgtgggacagattcagcgcgcag
ggcctcgacgtgccgaccggtcccgtgctgctcgtcgacgatctcgccgacagccgctgg
acgctcacggtcgccgcgcgcacgctgcgccaggcgggggcaagcgacgtgctcccgttc
gtgctcgcgctgcgcggctga
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