Microbacterium sp. CGR1: AKG07_00560
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Entry
AKG07_00560 CDS
T04046
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mim
Microbacterium sp. CGR1
Pathway
mim03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AKG07_00560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mim03400
]
AKG07_00560
Enzymes [BR:
mim01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AKG07_00560
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AKG07_00560
DNA repair and recombination proteins [BR:
mim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AKG07_00560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Ribosomal_S13
Zn_ribbon_TFIIB
NFACT_N
DUF7573
DZR
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
AKV85030
LinkDB
All DBs
Position
complement(120039..120902)
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AA seq
287 aa
AA seq
DB search
MPEMPEVQGLTTFLTQSAVGRTIVRTSVGAIAALKTYDPPNSALHGQQITAASRRGKFVV
LSCGDDLHLVFHLAKAGWLRWYETLPTTPIKPGKSPIAVRVGLDDESGFDLTEAGTKKSL
AVYVVRDPQDVPGIARLGPDPLDESFTREVFGGLLQGRRTQIKGLLRDQGVIAGIGNAYS
DEILHAARMSPYAIADKLDDDEVDRLYAAMQTTLADAVAEASGKPPADLKDAKRRGMQVH
ARRGEACPVCGDTVRSVFFADRSMEYCPTCQTGGKPLADRRLSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgccggagatgccggaagtacagggcctgaccacattcctcacccagagcgcggtgggg
cggacgatcgtgcgaaccagcgtgggcgcgatcgccgcgctcaagacatacgacccgccg
aactccgcactgcacggtcagcagatcactgcggcctctcgacggggaaagttcgtcgtg
ctctcgtgcggcgacgacctgcatctcgtcttccacctggccaaggcgggctggctgcgc
tggtacgagacgctgcccacgacgccgatcaaacccggcaagtcacccatcgccgtccgt
gtcggcctcgacgacgagagcggattcgacctcaccgaggccggcaccaagaagtcgctc
gccgtgtatgtcgtgcgcgacccgcaggacgtcccggggatcgcccggctcgggcccgac
cctctcgacgagtcgttcacccgggaggtcttcggcggtctgctccaggggcggcgcacg
cagatcaagggcttgctccgcgatcagggcgtgatcgccggaatcgggaatgcctactcc
gacgagatcctgcacgccgcgcggatgtcgccgtacgcgatcgccgacaagctcgacgac
gacgaggtcgatcgcctgtatgccgccatgcagacgactctcgcggatgcggtcgccgag
gcctcgggcaagccgccggccgacctcaaagacgccaagcgccgtgggatgcaggtgcat
gcccgtcgtggcgaggcctgccccgtgtgcggcgacacggtgcgcagcgtcttcttcgca
gatcgctcgatggagtactgcccgacgtgccagaccggtggcaaaccgctcgccgatcgc
cggttgtcacggctgctcaagtag
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