KEGG   Microbacterium sp. CGR1: AKG07_02595
Entry
AKG07_02595       CDS       T04046                                 
Name
(GenBank) ribonuclease
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
mim  Microbacterium sp. CGR1
Pathway
mim03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mim00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AKG07_02595
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mim03019]
    AKG07_02595
Messenger RNA biogenesis [BR:mim03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AKG07_02595
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: AKV85362
LinkDB
Position
561154..562830
AA seq 558 aa
MSIPLAEPAALDEGTLRVTPLGGLGEIGRNMTIFEFDGKILIVDCGVLFPEEHQPGVDLI
LPDFEPIKSRLDDIVGVVLTHGHEDHIGAVPYLLRLKSDIPVIGSGLTLALVEAKLKEHR
IKAYTLTVKEGQREQVGPFDLEFVAVNHSIPDALAVAIRTPAGLVLATGDFKMDQLPLDG
RITDLRAFARLGEEGVDLFLVDSTNADVPGFTPTERSIGPVLDQVIGKAPRRVIVASFSS
HVHRVQQVLDAAHAHGRRVALLGRSMLRNMTIAEDLGYLKVPSGLLIDYKKARDLPDDKI
VYMSTGSQGEPMAVLSRMANLDHAIEPGPGDTVILASSLIPGNENAVYRVIDGLTKLGAN
VVHKANAKVHVSGHAAAGELIYCYNILRPKNVLPVHGEYRHLIANAKLAQDTGIEAERTI
IASNGTVIDLKGGDARVVGQLDLGFVYVDGSTVGAITDADLKDRRILAEEGFVSVIVVVD
AATGRIISGPEIHARGIAEDDSVFDDVTPKIIAALKEASGNGVRDTHALSQVIRRTIGRW
VNQKLRRRPMIVPLVIEA
NT seq 1677 nt   +upstreamnt  +downstreamnt
atgtccatcccgctcgcagaacccgcagctctcgacgaggggacgctgcgggtcactccg
ctcggcggactcggtgagatcggtcgcaacatgaccatcttcgagttcgacggcaagatc
ctgatcgtcgactgcggagtgctcttcccggaggagcaccagcccggagtcgacctgatc
ctgccggacttcgagccgatcaagagccgcctcgacgacatcgtcggagtcgtcctcacc
cacgggcacgaggaccacatcggtgccgttccctacctgctgcgcctgaagagcgacatc
cccgtgatcggatcgggcctcacgctcgcgctggtcgaggcgaagctcaaggagcaccgc
atcaaggcctacaccctgacggtgaaggagggccagcgggagcaggtcggaccgttcgac
ctcgagttcgtcgcggtcaaccactcgatcccggacgcactcgccgtggcgatccgcact
cccgcgggcctcgtgctggcgaccggcgacttcaagatggaccagcttccgctcgacgga
cgcatcaccgacctccgcgcgttcgcccgcctcggcgaggaaggggtcgacctgttcctc
gtcgactcgacgaacgccgacgtgcccgggttcactcccacggagcgctcgatcggcccc
gtgctcgatcaggtcatcggcaaggcgcctcgccgggtcatcgtcgcgagcttctcgagt
cacgtgcaccgcgtgcagcaggttctcgacgccgcgcatgcgcacggccgacgggtcgcg
ctgctcggacgcagcatgctgcgcaacatgacgatcgccgaggacctcggatacctgaag
gtgccgagcggtcttctcatcgactacaagaaggcccgcgaccttccggacgacaagatc
gtctacatgtccaccggctcgcagggcgagcccatggccgttctgagtcgcatggccaac
ctcgaccacgcgatcgagcccggaccgggtgacaccgtcatcctggcctcgagcctcatc
cccggcaacgagaatgccgtgtaccgcgtgatcgacggtctgaccaagctcggcgcgaac
gtggtgcacaaggcgaacgccaaggtgcacgtctcgggccatgctgcagcgggtgagctc
atctactgctacaacatcctgcgacccaagaacgtgctgcccgtgcacggcgagtaccgc
catctgatcgccaacgccaagctggcgcaggacacgggcatcgaggccgagcgcacgatc
atcgcctcgaacggcacggtcatcgacctgaagggcggcgacgcccgagtggtcggccag
ctcgatctcggtttcgtgtacgtcgacggctcgaccgtcggcgcgatcacggacgcagac
ctcaaggatcgtcggatcctggctgaagagggcttcgtctccgtgatcgtcgtggtcgat
gccgccacaggtcgcatcatctccggtccggagatccacgcgcgcggcatcgccgaagac
gattccgtcttcgatgacgtcaccccgaagatcatcgccgccctcaaggaggcctccggc
aacggcgtgcgcgacacgcatgcgctctcgcaggtcatccgtcggaccatcgggcgctgg
gtcaaccagaagctccgtcgtcgtccgatgatcgtcccgctggtcatcgaagcgtga

DBGET integrated database retrieval system