Microbacterium sp. CGR1: AKG07_02595
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Entry
AKG07_02595 CDS
T04046
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mim
Microbacterium sp. CGR1
Pathway
mim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKG07_02595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mim03019
]
AKG07_02595
Messenger RNA biogenesis [BR:
mim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AKG07_02595
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKV85362
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Position
561154..562830
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AA seq
558 aa
AA seq
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MSIPLAEPAALDEGTLRVTPLGGLGEIGRNMTIFEFDGKILIVDCGVLFPEEHQPGVDLI
LPDFEPIKSRLDDIVGVVLTHGHEDHIGAVPYLLRLKSDIPVIGSGLTLALVEAKLKEHR
IKAYTLTVKEGQREQVGPFDLEFVAVNHSIPDALAVAIRTPAGLVLATGDFKMDQLPLDG
RITDLRAFARLGEEGVDLFLVDSTNADVPGFTPTERSIGPVLDQVIGKAPRRVIVASFSS
HVHRVQQVLDAAHAHGRRVALLGRSMLRNMTIAEDLGYLKVPSGLLIDYKKARDLPDDKI
VYMSTGSQGEPMAVLSRMANLDHAIEPGPGDTVILASSLIPGNENAVYRVIDGLTKLGAN
VVHKANAKVHVSGHAAAGELIYCYNILRPKNVLPVHGEYRHLIANAKLAQDTGIEAERTI
IASNGTVIDLKGGDARVVGQLDLGFVYVDGSTVGAITDADLKDRRILAEEGFVSVIVVVD
AATGRIISGPEIHARGIAEDDSVFDDVTPKIIAALKEASGNGVRDTHALSQVIRRTIGRW
VNQKLRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcccgctcgcagaacccgcagctctcgacgaggggacgctgcgggtcactccg
ctcggcggactcggtgagatcggtcgcaacatgaccatcttcgagttcgacggcaagatc
ctgatcgtcgactgcggagtgctcttcccggaggagcaccagcccggagtcgacctgatc
ctgccggacttcgagccgatcaagagccgcctcgacgacatcgtcggagtcgtcctcacc
cacgggcacgaggaccacatcggtgccgttccctacctgctgcgcctgaagagcgacatc
cccgtgatcggatcgggcctcacgctcgcgctggtcgaggcgaagctcaaggagcaccgc
atcaaggcctacaccctgacggtgaaggagggccagcgggagcaggtcggaccgttcgac
ctcgagttcgtcgcggtcaaccactcgatcccggacgcactcgccgtggcgatccgcact
cccgcgggcctcgtgctggcgaccggcgacttcaagatggaccagcttccgctcgacgga
cgcatcaccgacctccgcgcgttcgcccgcctcggcgaggaaggggtcgacctgttcctc
gtcgactcgacgaacgccgacgtgcccgggttcactcccacggagcgctcgatcggcccc
gtgctcgatcaggtcatcggcaaggcgcctcgccgggtcatcgtcgcgagcttctcgagt
cacgtgcaccgcgtgcagcaggttctcgacgccgcgcatgcgcacggccgacgggtcgcg
ctgctcggacgcagcatgctgcgcaacatgacgatcgccgaggacctcggatacctgaag
gtgccgagcggtcttctcatcgactacaagaaggcccgcgaccttccggacgacaagatc
gtctacatgtccaccggctcgcagggcgagcccatggccgttctgagtcgcatggccaac
ctcgaccacgcgatcgagcccggaccgggtgacaccgtcatcctggcctcgagcctcatc
cccggcaacgagaatgccgtgtaccgcgtgatcgacggtctgaccaagctcggcgcgaac
gtggtgcacaaggcgaacgccaaggtgcacgtctcgggccatgctgcagcgggtgagctc
atctactgctacaacatcctgcgacccaagaacgtgctgcccgtgcacggcgagtaccgc
catctgatcgccaacgccaagctggcgcaggacacgggcatcgaggccgagcgcacgatc
atcgcctcgaacggcacggtcatcgacctgaagggcggcgacgcccgagtggtcggccag
ctcgatctcggtttcgtgtacgtcgacggctcgaccgtcggcgcgatcacggacgcagac
ctcaaggatcgtcggatcctggctgaagagggcttcgtctccgtgatcgtcgtggtcgat
gccgccacaggtcgcatcatctccggtccggagatccacgcgcgcggcatcgccgaagac
gattccgtcttcgatgacgtcaccccgaagatcatcgccgccctcaaggaggcctccggc
aacggcgtgcgcgacacgcatgcgctctcgcaggtcatccgtcggaccatcgggcgctgg
gtcaaccagaagctccgtcgtcgtccgatgatcgtcccgctggtcatcgaagcgtga
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