Microbacterium sp. CGR1: AKG07_16675
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Entry
AKG07_16675 CDS
T04046
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mim
Microbacterium sp. CGR1
Pathway
mim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AKG07_16675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mim03021
]
AKG07_16675
03400 DNA repair and recombination proteins [BR:
mim03400
]
AKG07_16675
Enzymes [BR:
mim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AKG07_16675
Transcription machinery [BR:
mim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AKG07_16675
DNA repair and recombination proteins [BR:
mim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AKG07_16675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKV87667
LinkDB
All DBs
Position
3484520..3488395
Genome browser
AA seq
1291 aa
AA seq
DB search
MLESNTFDELRIGLATADHIRAWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHRDLGTQENNIRLELKTLGDRRDAKIAERLARLEEE
LASLEAEGAKADAKKKVKDAAEKEMSLIRKGADEAIAKLERVWEDFRTLEVGALRPEDDV
FHELQDRFGQYFEAYMGAESIQRRLAAFDLAAEAESLHLQISEGKGQRKIRAIKRLKVVN
SFLETGMSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKAGAAGEGR
AFGSVGEAILAKDEGTLDLQAKVRIRIPGLTFLEGEAPEGYERHGLVDASLGQAIFNDTL
PKGYPFVREQADKNKLSQIVNKLAEEYPKVETAASLDRIKDAGFYWATRSGVTVALSDIL
TPPNKAEIVAGYEKQAAKVQSQYEKGLTTDVERRQELIKIWTEATDEVQAAMKANFPEDN
TINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGTR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTSKGLELPIAAPNSQGELVRDANVE
NSVFARTLASDVVDSKGEVLASAGDDVGDVLIDKLVGLGVESIKVRSVLTCDSAVGVCAQ
CYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKAASPIAEADGRITIDETDKAKKVILTPDNGDEEVIYPVLKRATLLVEDGQHVTV
GQPLLVGTLDPKEVMRVMGAREVQRYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHADTTLLPGEMVDLKRYQAINREAVAEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKRDPLVGLKENVIIGKLIPAGTGLSKYRDVTVEATEEAKSERYPNRI
FASDGAYADGDFGYVDFDAFSTDDITPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgagtcaaacactttcgatgagcttcgcatcggcctggccaccgcggaccacatc
cgcgcctggtcctacggcgaggtcaagaagcctgaaaccatcaactaccgcaccctgaag
ccggagaaggacggtctcttcggagagcagatcttcggcccgtcccgcgactgggagtgc
gcctgcggcaagtacaagcgtgtccgcttcaagggcatcgtctgcgagcgctgcggcgtc
gaggtcaccaagtcctcggtccgtcgtgagcgcatgggtcacatcgagctcgccgctccc
gtcacccacatctggtacttcaagggtgttccctcgcgtctcgggtacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtcatctcggtcgac
gaggatgctcgtcaccgcgacctgggcacgcaggagaacaacatccgtctcgagctgaag
acgctcggagaccgtcgcgacgcgaagatcgccgagcgcctggctcgcctggaggaggag
ctcgcttccctcgaggcggagggtgccaaggccgacgcgaagaagaaggtcaaggacgcc
gccgagaaggagatgtcgctcatccgcaagggtgccgacgaggcgatcgccaagctcgag
cgcgtgtgggaggacttccgcacgctcgaggtcggcgcactgcgtcccgaggacgacgtc
ttccacgagctccaggaccgcttcggtcagtacttcgaggcctacatgggcgccgagtcg
atccagcgtcgcctcgcggcgttcgacctggcagccgaggcggagagcctgcacctgcag
atctccgagggcaagggccagcgcaagatccgcgcgatcaagcgtctgaaggtcgtcaac
tcgttcctggagaccggcatgagcccggccgccatggtcctcgacgtcgttccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtcttcgtcgtctgatcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgca
ctgttcgacaacggtcgccgtggtcgtcccgtcaccggtaccggcaaccgtgccctgaag
tccctcagcgacatgctgaagggcaagcagggtcgtttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcaaatggctctggagctcttcaagccgttcgtcatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggcggccaagcgcgccgtcgagcgcacgcgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgtccggtgctgctcaaccgt
gcgcccacgctgcaccgtctcggcatccaggccttcgagcctcagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgcgcggcgttcaacgccgacttcgacggtgaccag
atggctgtccacctgccgctgtcggtcgaggctcaggccgaggcccgcgtgctgatgctc
gcgtcgaacaacatcctgaagccgtccgacggacgcccggtcaccctgccttcgcaggac
atgatcatcggtctgcaccacttgaccacggtcaaggcgggcgcagccggtgagggccgt
gcattcggttcggtgggcgaggcgatcctggcgaaggacgagggaaccctcgacctgcag
gccaaggtccgcatccgcatcccgggtctcacgttcctcgagggcgaagctcccgagggc
tacgagcgtcacggtctcgtcgacgcatcgctcggtcaggcgatcttcaacgacacgctg
cccaagggatacccgttcgtccgcgagcaggctgacaagaacaagctgtcgcagatcgtc
aacaagctggccgaggagtaccccaaggtcgagacggctgcgtcgctggaccgcatcaag
gacgccggtttctactgggccacgcgctcgggtgtgaccgtcgccctgagcgacatcctc
acgccgccgaacaaggctgagatcgtcgcgggctacgagaagcaggccgcgaaggtccag
tcccagtacgagaagggcctcacgaccgacgtcgagcgtcgtcaggagctcatcaagatc
tggaccgaggcgaccgacgaggtccaggctgcgatgaaggccaacttccccgaggacaac
accatcaaccgcatggtgtcgtcgggtgctcgtggtaactggctgcagatccggaacatc
gccggtatgcgtggtctggtgaacaaccccaagggtgagatcatcccgcgtccgatcatc
tcctcgtaccgcgagggtctgtcggttgcggagtacttcatcgcgacgcacggtacccgt
aagggtctcgccgacaccgctctgcgtaccgccgactcgggttacctgacccgtcgtctg
gtggatgtctcgcaggacgtcatcatccgcgaagaggactgcggcacgtcgaagggcctc
gagctcccgatcgccgctccgaactcgcagggtgagctcgtgcgcgacgcgaacgtcgag
aactcggtgttcgctcgtacgctggcctccgacgtggtcgacagcaagggcgaggtcctc
gcctctgccggcgacgacgtgggtgacgttctcatcgacaagctggtcggtctcggtgtc
gagagcatcaaggtgcgctcggtcctcacctgcgactccgccgtcggtgtctgcgcgcag
tgctacggccgttcgctcgcgacgggcaagaccgtcgacatcggcgaggccgtcggcatc
atcgcggcacagtcgatcggtgagcccggtacccagctgacgatgcgtacgttccacacc
ggtggttcggcgtcggcagatgacatcacgcagggtctgcctcgcgtgcaggagctcttc
gaggctcgcaccccgaaggccgcatcgccgatcgccgaggccgatggccgcatcacgatc
gacgagacggacaaggccaagaaggtcatcctgacgcccgacaacggtgacgaggaagtg
atctacccggtcctgaagcgtgcgacgcttctggtcgaggacggtcagcacgtcacggtc
ggtcagcctctcctggtcggcacgctcgaccccaaggaggtcatgcgtgtcatgggtgcc
cgcgaggtgcagcgttacctcgtcggcggcgtccagggcgtctaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtccgtcagatgctccgcaaggtcaccgtc
gtcgatcacgccgacacgaccctgctcccgggtgagatggtcgacctcaagcgctaccag
gcgatcaaccgcgaggctgtggcagagggcaagcgccccgcgtccggccgtccggagctg
atgggtatcacgaaggcgtcgctcgcgaccgagtcgtggctgtcggccgcttccttccag
gagacgacccgcgttctcacgcaggccgccatggagggcaagcgcgacccgctggtcggt
ctcaaggagaacgtcatcatcggaaagctcatccccgccggaaccggtctctcgaagtac
cgcgacgtcacggtcgaggcgacggaggaagccaagagcgagcgctacccgaaccggatc
ttcgcatccgacggtgcgtacgccgacggcgacttcggttacgtcgacttcgacgcgttc
tcgacggacgacatcacgccgggtacgtacaactga
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