Microbacterium triticisoli: OED01_07235
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Entry
OED01_07235 CDS
T11496
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mimz Microbacterium triticisoli
Pathway
mimz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mimz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OED01_07235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mimz03019
]
OED01_07235
03009 Ribosome biogenesis [BR:
mimz03009
]
OED01_07235
Enzymes [BR:
mimz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OED01_07235
Messenger RNA biogenesis [BR:
mimz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OED01_07235
Ribosome biogenesis [BR:
mimz03009
]
Prokaryotic type
rRNA helicases
OED01_07235
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UYO98731
LinkDB
All DBs
Position
complement(1461729..1463534)
Genome browser
AA seq
601 aa
AA seq
DB search
MLTDAPEESPATPGFEELGITGPVLKAIRDLGYETPSPIQAETIPTLLNGRDVVGMAQTG
TGKTAAFALPVLERLDISQKTPQALVLAPTRELALQVCEAFESYASKMKGVHVLPVYGGQ
GYGVQLSALRRGVHVIVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVEQI
LAQTPEEKQVALFSATMPPQIRRLAQQYLRDPEEISIKSKTATGTNITQRYLVVSYQQKV
DALTRILEVENFDGMIVFVRTKNETETLAEKLRARGYSAAAINGDVPQVQRERSVNQLKD
GKLDILVATDVAARGLDVERISHVINFDIPTDTESYVHRIGRTGRAGRSGDAISFITPRE
RYLLKSIEKATRQAPTQMQLPSTEDINTTRLTRFDDAITTALSETSRIEAFRDIVAHYVR
NHDVPEADVAAALAVVAQGETPLLLDPQNDPLARAVAADNRPPRESGSRGERTERPPRTE
RRGRGDYAAYRIEVGRRHRVEPRQIVGALANEGGLGRDDFGAIKINPDFSIVELPANLDA
AVLDKLRDTRISGRLIEIKPDRGPRAGGARRQRDDEGSRYDSRPPRGDRDDKPFRKPRHK
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
gtgctgaccgacgcccccgaggaatcccccgcaaccccaggattcgaggagctcggcatc
accgggcccgttctcaaagccatccgtgacctcggatacgagaccccttcgccgatccag
gccgagaccatcccgacgctcctgaacggccgcgatgtcgtcgggatggcgcagaccggc
accggcaagaccgcggcgttcgcgctgcccgtgctcgagcgcctggacatctcgcagaag
acgccgcaggcgctcgttctcgcccccacccgcgagctcgccctgcaggtctgcgaggca
ttcgagtcgtacgcctcgaagatgaagggggtgcacgtcctgcccgtctacggaggccag
ggctacggcgtccagctttcggcgctgcgccgcggcgtgcacgtgatcgtcggcacgccg
ggtcgcatcatggaccacctcgccaagggcaccctcgacctctccgagctgaagtacctc
gtgctcgacgaggccgacgagatgctgaagatgggcttcgccgaagacgtcgagcagatc
ctcgctcagacgccggaggagaagcaggtcgcgctgttctcggccaccatgcctccgcag
atccgtcgcctcgctcagcagtacctgcgcgatcccgaagagatcagcatcaagtcgaag
accgcgacgggcacgaacatcacgcagcgctatctcgtggtgtcctaccagcagaaggtg
gacgcgctgacgcgcatcctcgaggtcgagaacttcgacgggatgatcgtcttcgtccgt
acgaagaacgagaccgagacgctcgcggagaaactgcgtgcgcgcggctattcggccgcg
gccatcaacggcgacgtcccgcaggtccagcgcgagcgcagcgtgaaccagctcaaggac
ggcaaactcgacatcctcgtcgccacggatgtcgccgcacgtggtctcgatgtcgagcgc
atcagccacgtcatcaacttcgacatcccgaccgacaccgagtcgtacgtgcaccgcatc
ggtcgcaccggccgtgccggacgctccggcgacgcgatcagcttcatcacgccgcgcgag
cgctacctgctcaagtcgatcgagaaggcgacgcgccaggctccgacgcagatgcagctg
cccagcaccgaagacatcaacacgacgcgactcacacgcttcgacgacgccatcacgacc
gcgctgagcgagacgagccgcatcgaggcgttccgcgacatcgtcgcgcactacgtccgc
aaccacgacgtccccgaggcggatgtggcggcggcgctggccgtcgtggcgcagggcgag
acgccgctgctgctggatccgcagaacgatccgctggcccgagccgtcgccgccgacaac
cgaccgccgcgtgaatcgggatcccggggcgagcgcacggagcgtccgccgcgcaccgag
cgacgcggccggggcgactacgccgcgtaccgcatcgaggtcggccgccgccaccgtgtg
gagccgcgtcagatcgtgggtgcgctcgcgaacgagggcggtctcggtcgcgacgacttc
ggcgcgatcaagatcaacccggacttctcgatcgtcgagctgccagccaatctggatgcc
gcggttctcgacaagctcagggatacccggatctcggggcgcctgatcgagatcaagccg
gaccgcgggccacgcgccggcggcgcacgacgccagcgcgacgatgagggatcccgttac
gacagccgtccgcctcgcggcgaccgggacgacaagccgttccgcaagccccgacacaag
ggctga
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