Methylacidiphilum infernorum: Minf_0268
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Entry
Minf_0268 CDS
T00727
Symbol
ysh1
Name
(GenBank) Predicted exonuclease of the beta-lactamase fold involved in RNA processing
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
min
Methylacidiphilum infernorum
Brite
KEGG Orthology (KO) [BR:
min00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Minf_0268 (ysh1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
min03021
]
Minf_0268 (ysh1)
03019 Messenger RNA biogenesis [BR:
min03019
]
Minf_0268 (ysh1)
Transcription machinery [BR:
min03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Minf_0268 (ysh1)
Messenger RNA biogenesis [BR:
min03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Minf_0268 (ysh1)
U7-dependent histone pre-mRNA processing factors
Minf_0268 (ysh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B
RMMBL
Beta-Casp
Lactamase_B_2
Lactamase_B_6
Anti-Pycsar_Apyc1
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
ACD82328
UniProt:
B3DY51
LinkDB
All DBs
Position
complement(267353..268726)
Genome browser
AA seq
457 aa
AA seq
DB search
MKFINLTRSLEIGANSYFLDFGEDGRIVLDAGLHPKIEGELATPNFQSLEDYPIDCLIIS
HAHHDHTGALPLYLRKYPNLKVFLSEPTYYLTPPLLHNSVEVMLKQRLALQLPEYPLYTH
KEIDQGTERWQACHINKEWSLNGYPNPKHEPLTFRFYPSGHILGAVGVRIFHRGRRIFYT
GDVSFKEQTLMLPADFPTEGIDVLIIESTRGALEMEKGVTRQTEIQRLVESIENTFDRGG
SVLIPIFALGKTQETLTTLFFEQQEGRLRKCPIYIGGLSRSFSEIYDKLSSRSLRRYPGF
KILDTIAPIVINGKKTHRIQPAKGEIYLVTSGMMNENTISNILAQKFLPNEKNSIFFVGY
CDPDSPAGQLLATPRGNLVVLNSSSKPQPVLCEVDHFDLTSHALREDILSYIQLLEPRTC
ILVHGDPNALDWFKQRLEEESPQINLVIPSPGQPIAI
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttataaatttaacacgttctctagaaataggggccaattcttattttttagac
tttggagaggacggtcgaatagttctcgatgcggggcttcaccccaaaattgaaggagaa
ctggctacgccaaattttcaaagcttggaagactatccaatagattgccttatcataagc
catgctcatcatgaccatacgggagctttgcccttatatctcagaaaatatccaaacctc
aaggtcttcttaagcgaacccacctattatttaactcctcccctccttcacaattctgtt
gaagtcatgcttaaacagaggcttgctctgcaacttcctgaatatcctctttatactcat
aaagagattgatcagggtacggaacgatggcaagcctgtcacattaataaggaatggtcc
ttaaatggttatcccaatcccaagcatgaacccctgacttttcggttttacccgagtgga
catatacttggagctgtaggagttcgtatattccaccgagggagaagaatattttatacc
ggagatgtcagcttcaaagaacaaaccctgatgcttcccgcggatttccctacagaggga
atagatgtccttatcatcgaatccacccggggtgcccttgaaatggagaagggagtaacc
cgacagacagaaattcaaagactggtcgagagcatagaaaatactttcgataggggagga
tcggttctcatcccgatttttgctctcgggaaaacccaagaaaccctgactacccttttt
ttcgaacaacaagagggcaggctgagaaaatgtcccatctacattggaggattaagtaga
agtttttctgaaatttacgataaactttcttcaagatctttaaggagatacccgggattc
aaaatcctggataccatagctcccatagtcatcaatgggaaaaaaacccaccgtattcaa
ccggcaaaaggggaaatctatctcgttacctccgggatgatgaatgaaaataccatttcc
aatatcttggctcaaaaattcttgcccaacgaaaaaaactccatattttttgtcggctat
tgtgatccagactctccagccggtcaacttctcgccacgcctagaggaaatcttgttgtg
ctcaacagctcaagcaaacctcaaccggtcctttgtgaagtggatcattttgatcttacc
agccacgccttaagagaggacatcttatcttacatccaactccttgagccaagaacatgt
attctggtccacggggatcccaacgctctggattggttcaaacaaagactagaggaagaa
agccctcagattaacctcgtgattccttctccaggacaaccgatagctatttag
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