Methylacidiphilum infernorum: Minf_0293
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Entry
Minf_0293 CDS
T00727
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor mfd (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
min
Methylacidiphilum infernorum
Pathway
min03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
min00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Minf_0293 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
min03400
]
Minf_0293 (mfd)
Enzymes [BR:
min01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Minf_0293 (mfd)
DNA repair and recombination proteins [BR:
min03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Minf_0293 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
Cas3-like_C_2
RecG_dom3_C
Helicase_C_2
Glyco_tran_WecG
VTT_dom
Motif
Other DBs
NCBI-ProteinID:
ACD82353
UniProt:
B3DY76
LinkDB
All DBs
Position
complement(288758..291940)
Genome browser
AA seq
1060 aa
AA seq
DB search
MTANMATLNLNLQNNKEGSCPSQASKEMTFSYEKWLDHPLLKNLHHRIIEQRNCAIDSLP
LSGQSFFLASFLRVYRGPLLVIAENIKKTNEIALGLECWGSPYLILPEVEPVPAESLPDP
TFLAERLSTAYSLLDFPSGIIITTEQAMEEALPSPELLKEKRLPLAVENSFDRKAVIEKL
VTAGYERVDSVDCRGQFAVRGAIIDTFCWDSCYPLRMEWEGNRLISLRQFDPITQRSFKP
LAQAHLCFFNLEDMLKSGASLHDYLPQAIPTFWSKSPEIPIPDVGIHFESHLFLDTPKGD
WFYQERRWQLFLEALGRWIEKQWEVVIFVNNEGEESRLKEILNNQGISTEKILFSKSPLL
RGFCWPEAKLSILTDAEIFGRYQNQKILLRSQQKNDYFRAPLGSDIFEQWKEGDIVVHLQ
KGICKFKGIKTIEGTNTEMVELEFDQQAKLYVPIDQAHLIARYIGGTKKLPKLDSLGGNR
WIKAKRAAQKAVTDLAEKLLKINAEREVLEGFAFPQDDQWQKEFEEAFIYEETPDQLKAI
EETKKDMESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAVLLTPTTVLAKQHFNTL
RERFADYPIHTALLCRFVKNSEEKEILAGLKEGTVDVVVGTHRLLSADVEFKDLGLIVID
EEQRFGVLQKEKWKEKFRFIDVLLLSATPIPRTLYLAMAGARDMSLIETPPPNRFPIETI
VGPYDERVIRQAIERELNRGGQVYFLHNRIRTIEKVASRLKSLLPSIKIDIGHGRMKKHE
LEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRADLFGLADLYQLRGRVGRSNQK
AYAYLLLPRDLFIQSDAKKRIKAMQEHSQLGTGFQIALRDLEIRGAGNLLGTSQSGHIAS
IGFELYCKLLKKAIQKIQGKETEPLIDCRLSLDFLLPEPGGGRHALAYIPFSYMERRQER
LHAYRQLAEASQPEELEEIKKSWKDRYGPWPEPVEHLFSLVEIRIIAARKGIERVETERD
KLKLIKNNDYLFTKQGKFPRLIEAEPKDKILQIKKWLESF
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgcaaacatggccactctcaatttaaacttacagaataataaagaagggagttgt
ccgagccaagcaagcaaagaaatgaccttttcttacgaaaagtggctggaccatcccttg
ttaaaaaatcttcatcaccgcattattgagcaaagaaactgcgcaatcgattctttgcct
ctatcgggccagtctttctttctggcttctttcctcagggtataccgtggacccctttta
gtgatagctgaaaacataaaaaaaaccaacgaaattgccctcggtttagaatgctgggga
agtccttatctcatccttcccgaagttgagcctgtgccggcagaaagcttgcctgacccg
acatttttagccgaaaggctaagcacggcttacagccttctcgattttccttctggaatc
atcatcactaccgaacaggccatggaagaagctcttccctctcctgagctattaaaagaa
aagcgcctgccccttgctgtagaaaattcttttgatagaaaggccgtcattgaaaagctg
gtcaccgccgggtatgaaagggtcgattccgtcgattgcaggggccagtttgcggtacgg
ggagcgattatcgacactttctgctgggacagttgctatccgctgaggatggaatgggaa
ggcaatcggcttatttccttaagacaatttgatcccatcacccaacgttcattcaagccc
cttgctcaagcccatctttgctttttcaatttagaagatatgctgaagagcggggccagc
ctccatgattacctgcctcaagcgataccaacattttggtcgaaatccccagaaataccg
attcccgacgtaggcatccattttgagagccacctttttctcgatactccaaaaggggat
tggttttaccaggaaagaagatggcagttatttctagaggcgctgggtcgatggatcgaa
aaacaatgggaagtggtgatttttgtcaataacgaaggcgaagaatcccgtctcaaggaa
atcctaaataaccaaggcattagcactgaaaaaatcctcttttccaaaagtcccctttta
aggggtttttgctggcctgaagccaagctttcgattttgacagatgcagaaatcttcggc
aggtaccaaaaccagaagatattgctgcgtagccaacaaaaaaacgattatttcagggct
ccgctgggtagcgatattttcgaacaatggaaggaaggggacatagtcgtccacctgcaa
aaagggatttgcaagtttaaaggcattaaaacgatagagggaacgaacaccgaaatggtc
gaactggagtttgaccagcaagccaagctctatgtccccatagaccaggctcatcttatc
gctcggtacattgggggcaccaaaaaactacccaaactcgattctttggggggaaacagg
tggataaaagctaaaagagcggcacaaaaagcggttacagatcttgcagaaaaattactc
aagatcaatgcggaaagagaagttctcgaaggatttgcctttccccaagacgaccagtgg
caaaaggagttcgaagaggcttttatctatgaagaaactccagatcagctaaaagccata
gaagagacaaaaaaagacatggaaagcaaaaggcccatggataggctcatttgcggggac
gttgggtttgggaaaaccgaagtagctatccgggccatctttaaggcggtgatgggcggc
aaacaggccgttttgcttaccccaacgacagttcttgccaagcagcatttcaataccctc
agggaaagattcgccgattatcctattcacacagctcttctttgccgatttgtgaaaaac
agcgaagaaaaggagattcttgccggccttaaagaaggaaccgtagatgtcgtggtggga
acgcacagattgttgtccgcagatgtagagttcaaggatttggggctgatcgtgattgat
gaagaacaacgatttggtgttctgcaaaaagaaaaatggaaagaaaaattcaggtttata
gacgtcttactgctttccgcaacgcctataccaagaactttgtatttagccatggccggg
gccagggacatgagcctgattgaaacgcctccccccaaccgtttccccatagaaaccatc
gttggcccgtacgatgaaagggttatccggcaggctattgaaagggaattaaataggggg
ggacaagtttattttctccataaccgaataagaaccatagaaaaggtggcctcgaggtta
aaatcccttttgccctcgattaaaatcgatattggacatgggagaatgaaaaaacatgaa
cttgaagaggtcatggaaagatttgtagagggcaaaatcgatgtcctgctcgccacgagt
ataatcgaaaatggattggatatccctaatgccaatacgattatcattgacagagccgat
ctttttgggcttgccgatctctaccaattaagaggaagagtggggagatccaatcaaaag
gcttatgcctatcttttacttccgagggacttgttcatacaatccgacgccaagaaaaga
ataaaggccatgcaagaacattcccaactgggtaccggatttcaaatcgccctaagagac
ctagagatacgtggagccggcaacctcctagggacttctcagagtggtcatatcgcctcc
atcggatttgaactttattgcaagctgcttaaaaaagccatccaaaagattcaaggcaaa
gagaccgaacctctaatcgactgtcggctgtcccttgattttttgctccccgagcctgga
ggaggacggcatgctttagcttacattcctttttcctacatggaaagaaggcaagagagg
ctccatgcttacagacagttagccgaagccagccagccagaagagttggaagaaatcaaa
aaaagctggaaagatagatacggaccatggccggaacctgtagaacatctcttttccctt
gtcgaaatccgtatcattgccgcacgcaaaggcatagaaagagttgaaacagaaagagac
aagttgaagcttataaaaaacaacgattatttatttacaaagcagggcaaattcccccgc
ttgatagaagccgaacccaaggataagattttgcaaataaaaaaatggttagaaagcttc
tag
DBGET
integrated database retrieval system
